K30603

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30603

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30603

Determination of introduced cDNA(s)

  • J013071C24 - Rice Full-length cDNAs - Original: J013071C24

    full reading [+] show sequence

    Nucleotide sequence: J013071C24 - full reading
    TTTCGAAGTA CAGATACAGA AGCAGGCGCT GCTGCTAGAG GCGAAGGATA 
    TAACAAGCGG CGGCCGGAGA CGACGACGGA GAAATCCGGA AGAAGAGGAA
    CTGCCGGCGC TGAGCTGCAA TCGCGCCCAA GAATCCATCT CCTCCGGCGG
    CAGCTTACAG GGTCGCTGCT CCATCTCCTT GAATTGTACT AGCTGTCTTG
    TGCTTAAGAT TTGCGCTCGG CTTCATTTTT GGATTCAAGC TGCTGGGTGT
    GGATTTTTAT GATGGGCTGT CTACCAACAA AGCAAGTGGG TCGTTCAACA
    CATTCCTTGA ATCCACGGGA AGCTGTGGCT CTTGCGGCTG AAACATCTTT
    TACTGTGAAT GAAGTTGAGG CATTATACGA TCTCTTCAGG AAATTAAGTA
    ATTCAATAAT TAAAGATGGT CTGATTCACA AGGAAGAATT CCATCTTGCT
    CTCTTTAGGA ACAAGAAGAC AAATCTCTTC GTTGATAGGG TCTTTGATTT
    GTTTGATCAA AAAGGAAATG GTGTCATCGA ATTTGATGAA TTTGTTCGAT
    CTCTTAGTGT GTTTCATCCA GATGCACCTG AGGAACAGAA AGCTGGATTT
    GCATTTAAGT TATATGACCT AAGACAGACA GGGTTTATTG AAAGGCATGA
    GTTAAAGGAG ATGGTGTTGG CTCTTCTGGA TGAATCAGAT TTGAATATTA
    CAAGTGATGC TGTCGAGATG ATTGTTGATA GGACATTTGA CCAGGCTGAC
    ACAAAAGGCG ATGAGAGAAT AGACCAGGAG GAGTGGAATG AGTTTGTCAA
    AAATAATCCA TATGTGCTGA GGAATATGAC CCTCCCATAC CTCAAGGACC
    TCACCATGGT ATTCCCAAGT TTTGTGATTC ACTCAGAAGT CAGCGAAGCA
    GACATGGTTG CCTAACCTGA AACCTGGTGT TGCTACTTGC TAGATTGCAA
    GTTTGCAACA CTTCTAGCAT GTAATGTTTG TTCCTTGCGT GCATTGTTGA
    CTAGGGAAAC AGCCATATAG GAGATGAGTT GATGCCTCAA AATGTAGCAT
    CACTGACCAG CAGATGCTCA CTGTTGAGAT TATGGGCATA TAATGATTTA
    ATTTATTCCA TAAATAAATC ATGACATT

    Gene models with high sequence identity

    1. AT5G24270.2 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 8e-68; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan EF-HAND 2 12.477
    ProfileScan EF-HAND 2 11.222
    ProfileScan EF-HAND 2 9.297
    HMMPanther Calcineurin B protein 1.1e-109
    HMMPanther CALCINEURIN B 1.1e-109
    Gene3D EF-hand-like domain 9e-48
    superfamily EF-hand 4.5e-43
    FPrintScan Recoverin 0.000000000065
    FPrintScan Recoverin 0.000000000065
    FPrintScan Recoverin 0.000000000065
    FPrintScan Recoverin 0.000000000065
    HMMSmart Calcium-binding EF-hand 1
    HMMSmart Calcium-binding EF-hand 8.6
    HMMSmart Calcium-binding EF-hand 8.4

    See the detailed result >

    AT5G24270.2

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Curator Summary
    encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
    Computational Description
    SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
    Link
    InterPro Scan - TAIR