K30606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30606

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30606

Determination of introduced cDNA(s)

  • J013001N10 - Rice Full-length cDNAs - Original: J013001N10

    full reading [+] show sequence

    Nucleotide sequence: J013001N10 - full reading 
    GTGCGGTTCA TCGCCGCGGC ACAAAATGCT CCGCCGCAGC CGCCACTTCC 
    TCCCACCCAG ACCCCGCCGC CGGCCGAGAC CTCGCCGCGA GGCCCCCGCC 
    GCCGAGCCGC CCACCCCGAC CTACACCCGC GACGTCGTCC GCCGCGTCGA 
    CGCCATCCTC CGCGGCCACC CCTGGTCGGC GGCGCGGCCG CTCCTCCTCT 
    CCCTCCCGGG CCTCGCCTGG GACTCCCACA CCGTCGCGCG CGTCCTCAAG 
    GCGCACCCGC CTCTCCACAA GGCCTTCCTC TTCTTCCGCC TCGCCGCCGG 
    CGCAGGCGGC GGGTTCCGCC ACGACCGCTT CACCTACACC TCCATGCTCC 
    ACCTCCTCGG CGAGGCCGGC CGCGTGCCGG CCATGATGCG CCTCCTCGCC 
    GAGATGCTCC GCGCGGGGGT GGACCCCGAC GCCGCCACCT TCACCACGGT 
    CATGCACTGG CTGGCGCACG CCGGGGACGT CGACGCCGCG ATGCGGGTGT 
    GGGAGGAGAT GCGCGCGCGG AAGGGGAAGT GTCGGCCCAC CCTCGTGAGC 
    TACACGGCGT GCGTGAAGAT CCTGTTCGAC GCCGGGAGGC CTGCGGAGGC 
    CAGGGAGGTG TTCCAGGAGA TGGTGGCCGA GGGACTGCGG CCCAGCTGCA 
    AGACGTACAC GGTGCTCATC GAGCATCTCG CGAACGTAGG GAAATTTGAA 
    GCTACTATGG AAATTATGGA CAAGATGCAA GAAGCTGGTG TAGAACCAGA 
    TAAAGCACTC TGTAATATTC TAGTTCAGAA ATGCTCCAGG GCTGGTGAGA 
    CATCAGTGAT GACCCGAATT CTTCAATACA TGAAGGAAAA TTTCATCGTG 
    CTTCGCCGAC CTATATTTTT GGAAGCACTT GAAGCTCTAA AAGCTAATGG 
    TGAGAGTGAC AATCTTCTTC GGGAAGTGAA TCCGCATCTT GCATTTGAAG 
    GCATCGAATG TGACCCAGCA TTTACTGATC TAGGCTACAT TACTGTCAGG 
    AGTACGATCC TGTACCTTTT GGCTTCTAGA AACTGGTCCG CCGTAGAACA 
    CATGATAAAT GAAATGACCC CCAAGAATAT CAAGGTTGAA TCACATATCC 
    TCTCTGACAT TATTCAAGCA AGCTGTGCAA ACTGCAGACC ATCATGTGGG 
    CTTGCAGTTC TGCGTTACAG TCTAAGAATA GGCAATGAAC TTGGTAGATC 
    TGCATATGGC AGCCTTCTTG GTCATTACAT CAGAAATGGT TCATTCGATT 
    TGGTGTTTGA GATCGTTGAA ATATTGATTA AATCTGGCTG CAATCTTGGG 
    ACATATCTAT CATCTATATT AATAATAAAA CTGGCTTGTG CTGGGCATTC 
    TTCAACCGCA GTGCGCATTT TTGGATTATT GACTACAGAC AAGAATGTTG 
    TTACGTACAC TGCCCTTATG AGTGCCTATT TTCAAGATGG GAAAGTTGAT 
    AAGGCTCTCC AACTATTCTT GCAAATGAGT GCTAATGGAG TATCTGCATG 
    CCCAGGTACA TATGAAGTAC TGATACATGG ATTACAAATG GCTGGGCGGA 
    AACAGGAATC TGAACATTAC CGAAGAGAGA GAATGGAGAT GCAATGGCAT 
    CTTCAGTATC GCAATGAGCA TTCCCCTGAA GATAGCTTAT GTAACCATCT 
    GTTTTGTGAT TTTCATGGTT AGAAGATGGT CCAAAATCTT CATCTTTCAT 
    TAGCTGAATC CTTCCAGCAC CTATTGCTGC CTGAACATGA TGATATTGAC 
    ACACAGGTCT GTTGGTATTT TTAATTTTAT TTAATATATA CCTAAACATG 
    GAACTGTAAA TGATTTGGTT AATCTTTACT CT

    Gene models with high sequence identity

    1. AT2G01390.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 2e-107; Score: 387.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.00056
    HMMPfam Pentatricopeptide repeat 0.0001
    HMMPfam Pentatricopeptide repeat 0.00036
    HMMPfam Pentatricopeptide repeat 0.0031
    HMMPfam Pentatricopeptide repeat 0.28
    HMMPfam Pentatricopeptide repeat 0.000000046
    HMMTigr Pentatricopeptide repeat 0.00000011
    HMMTigr Pentatricopeptide repeat 0.0000031
    HMMTigr Pentatricopeptide repeat 0.000000086
    HMMTigr Pentatricopeptide repeat 0.00000012
    HMMTigr Pentatricopeptide repeat 0.15
    HMMTigr Pentatricopeptide repeat 0.017
    HMMTigr Pentatricopeptide repeat 0.0000021
    superfamily TPR-like 0.000000000000072
    ProfileScan Pentatricopeptide repeat 11.378
    ProfileScan Pentatricopeptide repeat 9.887
    ProfileScan Pentatricopeptide repeat 10.994
    ProfileScan Pentatricopeptide repeat 10.907
    ProfileScan Pentatricopeptide repeat 7.377
    ProfileScan Pentatricopeptide repeat 8.024
    ProfileScan Pentatricopeptide repeat 12.244
    ProfileScan Pentatricopeptide repeat 5.645
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3.3e-83

    See the detailed result >

    AT2G01390.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR