K30618

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30618

Determination of introduced cDNA(s)

J023078M01 - Rice Full-length cDNAs - Original: J023078M01

full reading [+] show sequence

TTGGCAGCAG CAAGGGCAAC AGAGGAGCCG TGGAGGTGGC AGGCGCTGCC 
GGCCGCGAAG AGAGGAAGCA ACAATGGCCT CTCCGCCTCC GCCGTTAGGG 
TCAGAGACGG CGATCTCCCC GGCGTACGGC GAGGAGGAGG AGGAGGAGGA 
GGAGGAGCAG TGCCGCATCT GCCGCGTCCC TGCGGAGGCG GGGCGCCCCC 
TGCGGCACCC CTGCGCCTGC CGTGGGTCCA TCCGCTTCGT CCACGACGAC 
TGCCTCCTCC GATGGCTCGC CACCCGCCGC ACCTCCCACT GCGAGGTTTG 
CAAGCGCCTC ATCTCCACCT GCCCTCTCTA CGCCGCGAAT GCTCCTGCAA 
GGCTCCCCTT GTCCGAGTTC ATGCTCGGCC TCGCCAACAA GCTCATGGGC 
TGGTTCTTCC TCCTCCTCTC CCTCCTCGCC GCCATGTACA TCTGGGAATT 
CGTCATGCCC TTCACCACCC TCTGGATATG GCGCCTCGCT CTTGCTAGGA 
GCTTTGCTCG GGTGCGCCAC CTGCTCTCCC TCCGGATCTT CGCTCATGCT 
CATGGACATG GCGCCCCCCT CTATGGCCTT ATGCCTTCTC CCGACGCCGT 
CTTCGCCTGT GTTTCTATCA GAAGAGCCTT TCTCCGGGAC CTCCCCCACT 
TCAGGGACCT CAATCCCATT GCCAGATTTG CTGCCCATGC TCTTGCTCCC 
TTTGCACTCT GGATTGCTCG CCTGGAAACT CGTCTCGACC GAAGGTTTGG 
AGGCTTGGAT AGTTTGCAAG TCATTGCGCT ACATACCGTT GAAGCTTCCT 
TGATGGTGGT ACTTCTTGAT GTGATGCTTG CTTGTGTTTT TGGTTTTATC 
CCCTTCTCAC TGGGGCGGAT AATCCTATTC TGCACATCGT GCTTCAGTTT 
TGGAAATATG GATAGAGTCC ACTCCTACAC TTCAACATCT TCTATCCTTT 
TAGTTGGATA TAGATTTATC TTTTCACTGG GTGTACTTTT CACTGGGTTT 
CATACTTTCG ACCAGTACTC GAGGGGAGAA CACCTCACAA TTGCAGTTTT 
CTTCAAGGTC TTGACCAATG GAATGTACAG ACTATTCAGC CCTCTTAGAA 
GGTTGCCTGG TATACATGTA ATGGTCCAGA TGGCATTGTC TTTCTTGCGA 
CTGTTCTTCA GAGGGATCAT AAATCTAGTC ACCGTTGCCA ATATTTCAGT 
TAATCTCATT AATGTGATTG CAATATGGCC GTTGTTCTTT GGCTGGTCAG 
TTGATATCTG TGCTTCACAA TTGTTTGGTG AAACAATATA TCAGAAGCTT 
GAACTTCTAT TTGCCTCATC TTTTGCTTCT ACTGCTCTTC ATTGGCTCAT 
TGGATGCATC TATTTGATGT TACTCTCAAT ATTTTCCAGT CCTCTTTGTC 
TGGTATTGGG TCCAGGAGTT ACTATTCCCT TTGTCCACTT TTCTGGAGAA 
GAAAGCTTGA TACAGCTCTT CCGCGAACCA TTCTACAAAT TTTCTTTAAA 
GCTGCTACCT GGTCTTTTTG TCAGTGCTGT AGATGTTGCT ATGGTCATTC 
TTGTTCCTGT TCAAATTGCT GGCCAATTGG CACCTAAGGT GTTCCCATTA 
GATATAACCT ACTTTGATCC TCCTACTAAG GGATCAGCAT TTTGGCAAGC 
ACCACGGAAC TATGCAGAGT TACTTTCTGG TGCCCTTCTT CTGAGGTTTC 
TCATCTGCAA TACACTCAAA TACCTTCAGC CTGGTCCACT ATTGCAGAAG 
TTACTGCTGT ATTGGTCTGC CACCACTAGA CGTGTTCTTG GTCTGCTTGA 
TTTATTGATT GCCTGGTCTG CTGGAGATGG TGAATGCGAG GATGGAAATG 
GTTCCACACG AAAATTCCAC CATGGTAGCA CTTCTGAAGA TGAGTACAAA 
AGGTAACACT ACTGGCACCA CCATGACACT CAATGCTCTC TCTCTCTCCT 
ACTCTCTTCC TCTCTCCAAA TTTGTGGCTT GATATAGGTT AGTGCCTGTA 
TGCTTGCTCA TTCAGGAATT TTCCATTTAG CCTGATTGCA TTCACTTCCA 
TTTCAATCAG ATTCGCCTAT TCGCGTACAC CCTCCATTTT CATTAAGTGC 
ACATAACTAG GCAATGGTTC TTTTGTGGGA GTGAACAAAA GTATCCTCCA 
ATATATGTCG AGCACGTAAA ATGTGGTAAA GTTTATCTAG GAGTTGTAAG 
CATGCTAAGT ATTTAGAAAC AATATTTCAG TCAAGACTCA ATAGTGCAAG 
TATTTAGAAA CATAGGGAGT ATAATACTCA CAGTGTGCGT ATATACTCAA 
CCCTAAAATA ATTGTATGAT AGTTTTATAA TGTATATCCT AAATCCATTT 
GCATTTTAAA TCAACATCGA TGGTGGCATA TTTAAGTTAC ATTGTTCTAG 
CTGCAGTATC TAATTTAAAC TAAGACCTTT CCAAGGATCC AAATTGAAAA 
TATCTATGAT GCGATTTATC TGCATATTAT GCATTCACCT ATTTCGTGAA 
ATATTGCAAG CATCATTGCC AGTTCTTTTA GATTTCCTGG TCAGAATCTT 
ACTCATTCTG CACTATTCCA TGACAAACAG GGAGACATGG ACTTTAACTG 
AAGTTAAGCA ATATAAGCAT GGTCGGGATA TTTTTTGTTA CTTTCTGCAG 
TTGGTTTCTT ATTGTTCACT GTGTGCTTAG AGGTACACTG CACATAACTA 
GGTTTCACGA TATCAATAAG TACAGTTTTT AGAGGTACCA AGTAGGCAGG 
GGTGAAGACA GGGAGAGGCG GAGGGAGTCC TGGCCTCTCC CAATGATGCA 
TTATCTGTTT ATGACCTGCT AATTATCTCT CTAATTACGT GATTAGTTGA 
AGCACTTTGG TGTAGGCATT CAAGCTTTCA ACACTAACTG TGTTTGCATG 
CCTAAACAAA CTAGGAGATA TACGCCTTTT TCCATGATAA TTAGTTGATT 
ACTGCATCCT GCACTTTGGG TAGATGGTTT TTGCATGCTC CTACACCAAG 
CTAATACATG GAAATGCAAT GGCATTAATT TAAACGGCTT GGCTGTTCTA 
ATGCCCTCAT ATCGTTGTTA ACTGCTAATA TCTATTTCTA CATTAGCCTC 
AATTCATTTA CCTCTTCACT TTAATTTAGA ATACTAAAAT ATTTAAAAAT 
AATATATGCA GCCAATTATA AATAATAGTC ACGGAAATAT TCTTTTGCTA 
TCCACATAAA ATACTTTTAT TTTACATGTA TTGTGATGCA ATTTTTTATG 
GTTCGATCAT TTTCACTCAA TATATAGCTC AAATTGACCC CCCCCTCAAG 
AGCAAATCCT GGCTTCGCCA CTGCACGAAG GGTATCTTAG TTATATTCAT 
CTTTTTGTTC TATGGGTGAA AAAAATATGC CCTATAAAAG TGAATCGAGG 
TACAGATTTA ATAAAGAGAA AGGAATCTAT GATTGGAATG TTAAAAGGAG 
ATATGGTGCT TTTATTTTTC TCAAGAGGCC ATGCTACATC TTACACTCTC 
TTATCGAGCA TACATTATAT GTGCTTCTCT TTCTTCTTGC GAACATAATA 
AGCTTCTTAT TTTTTTCGAT AGCTCGCTCT TGACAGTTCA TCTTACTATG 
TTGCTGGTAA GGCTTAGATT TCTAATATGA TTTGTTTATT TCTATTTTGA 
ATTTCTTTCT TGAAAAATTA ATTATACCCT GTTTCCTTAG TATTCTTGCA 
GCCTGGTGGG TGGTGGGTAG TCAGTAGTGT TGGCATGTGT TCCATTTGCT 
CCATTTTGCC TTTAAAGGGA TAATCCATCT CAGTACCTCT CGCCAAAGTA 
TGCGTCTCAT CATAGGACGT TTATACTTTT TTTGTTCTAT GTAGTGTGTA 
TTTATTCAGC GGTAACATTT TGACAGTCTG ACCATTCTTT TGGTTGAATT 
GACAGTCTGA TCCTTCATTA CTAAAGATAA TCATTTGCAG TTTTCAGTTG 
GCATGCAGAT CAAATAGATA TCAAAGAAAG AGTAAATTGC ACTGTTGGCC 
TCTAATTCTC TATGCTTGCA TAAGTCCCAG AGCTATTGAT CGCTAAACCT 
GCACAGGTCC CAGAAGTAGA AAGTTGCATA TCTTATCCTT GAACTCGTAA 
AACTGAATTA ACTAATATTA AAATAAGGTT TTGCTGTCTG ACTTGTTAGC 
TTGCTATTCT CGGCTGCCTG GCTACTATTT TACCATTCAA ATAATAGTTC 
TCTTTTTTCG TTGGCAAACC AAGAGAGCTT GACCGAAAAC ATAAATGTTA 
CTTTTTTTGC ACTCTGTACC AGGAGATTTG CTGCGGTTCG CCTGATTCTA 
CTTGTAGTGC TCTCATCGTC AACTCTTGTG ATATTCAATT CTGCTGTGCT 
TATTGTCCCA GTCTCTATTG GCCGTGCATT GTTGTTTGTC ATCCCTAAGT 
TGCCAATAGC AGGTGGATTG AAGTACAATG ATCTGTTTGC TTTTGCCATT 
GGATTTTGCA TCATATCAAC TATCATTGCC GCCTCTCGAG ATTTATTTGT 
CTACATGGCT TCTGGGAGAA CACACCTTCT GGCTTCCGTT ATCTACAAGT 
GGGGTATAAC TGCTTTGAAG GGTTCTCCAC TGCTGTTCAT ATGGATTGTC 
ATAATCCCCC TTCTGATTGG TCTGCTGGTT AATTTTCTAC TTATATCACC 
CTTCCTCGTG ACTGCCAATG GCATGTTCGT TATCGACCTC TTCTGTACTT 
GGTTCCTAGG GCTGCTACTG CTGAAGTTCT GGGTGAAGTT GGTTCATTGG 
ACAACGGTCA CACCTTTCCT GGTGTATTTC ATTGATGAAA GGTGGGACTG 
GAAGCTTACT CGGGCAAGAG AGGACGGGTT TTCGGGGCTG AGGGCATTGT 
GGGTCTTACA AGATGTATTG ATGCCTATCA CCTTGAAGCT TCTGACTGCT 
CTCTGTGTCC CATATGCGCT TGCGAAGGGT GTCTTCCCAA ACTTTGGCTA 
CCCTGATGCT GTGAACTTAA CAGTATACCG TTTTGCATGG TTAGGCGGCT 
TTGCCTTGTG TGTGCTGTAT GATCTAGCCA AGGTATTCTG CAAGGTCCTG 
GTTAAACTCC ATGATTCTAT CAGGGACGAG CGCTATCTTA TTGGGCAGAG 
GTTGCAAAAC TACGTTGACA ATAGCTGAAG ACCGTTTGTT TCTTTTTGAG 
GCAACAGAAC ACCGTTTCTC GTAGTAGTTA ATACACCGTT TAAACGATCG 
AGGATATATA GCTAATTGCC TGCAGTTCAT ATAGGATATA TATATATATA 
TGTTTAGTGA CTGATATTAA CAGTAGTTGA AAATGATGGA AATATCTTGG 
TGGTATTACC ATCAACAAGA ACACGCTGAG ATCCCAGAAA GATTTTCCGC 
TGACGGAAAT TGTAAATATG GATGCAATCT TCTATGAGAA TTTGCATTTT 
TATTTCTTTC

Gene models with high sequence identity

AT4G34100.2 [+] show detail - RING/U-box superfamily protein
E-value: 7e-44; Score: 177.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	MEMBRANE ASSOCIATED RING FINGER 1,8	2.1e-15
HMMPanther	MEMBRANE ASSOCIATED RING FINGER	2.1e-15
HMMPanther	SSM4 PROTEIN	9.7e-20
Gene3D	no description	8.3e-13
ProfileScan	Zinc finger, RING-CH-type	20.974
HMMSmart	Zinc finger, RING-CH-type	1e-20
HMMPfam	Zinc finger, C3HC4 RING-type	2.6e-08

See the detailed result >

AT4G34100.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR