K30629

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30629

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30629

Determination of introduced cDNA(s)

  • J033044E23 - Rice Full-length cDNAs - Original: J033044E23

    full reading [+] show sequence

    Nucleotide sequence: J033044E23 - full reading 
    GACATGTGCG CGCATGAACT ACGGGCTTAA TTTGCACCTC CGAGCGAAAC 
    ATTGATCGTT TCTTATGAAG CACACGCCCA CTGGTGGGTC AGTCACGATC 
    GCGCATTCAA AATCTCTCAT GTTTTTACAG TAAAATCCAC CCTGGAGCCT 
    GGATGACGGG AGAATGTAGA CCGCTCCTCA ACTCTGTGCT CGTTGGACTT 
    GGACGCAGCC TATAAGTGGC TGACCCCGAG TTCTCCGAGT TAGCAAGAAG 
    CCACTCCACT CGGCCGCTCC TGCATGTATA ACTAGCTAGT TCTAGCTCGC 
    TCAGGCACTC GATCCACCGC CGGGCGCGTT GGATTGAGAT AGGCTGAGGA 
    GATGATATCC GGGCACGACT TCTACACGGT GATGGCGGCG GTGGTGCCGC 
    TGTACGTGGC GATGTTCCTG GCGTACGGGT CGGTGCGGTG GTGGGGCATC 
    TTCACGCCGG ACCAGTGCTC CGGCATCAAC CGCTTCGTCG CCATCTTCGC 
    CGTGCCGCTC CTGTCCTTCC ACTTCATCTC CACCAACGAC CCGTACGCCA 
    TGAACCTCCG CTTCCTGGCG GCGGACACGC TGCAGAAGCT GCTCGTCCTG 
    GCGGGGCTCG CCGCGTGGTC GCGCCTCCCC TCGCGGACCG GCGCGCCGCG 
    GCTGGACTGG TCCATCACGC TCTTCTCCCT CTCCACGCTG CCCAACACGC 
    TCGTCATGGG GATCCCGCTG CTGATCGCCA TGTACGGGCC ATACTCCGGC 
    TCGCTCATGG TCCAGATCGT CGTGCTCCAG TGCATCATCT GGTACACGCT 
    GATGCTCTTC CACTTCGAGT TCCGCGCCGC GCGGATGCTG ATCGCCGACC 
    AGTTTCCGGA CACGGCGGCG TCCATCGTGT CCCTGCACGT CGACCCGGAC 
    GTGGTGTCGC TGGAGGGCGG CCACGCGGAG ACGGAGGCCG AGGTGGCGGC 
    GGACGGGCGG CTGCACGTCA CCGTGCGCCG GTCCTCGGTG TCGCGGCGGT 
    CGCTGCTGGT CACGCCGCGG CCGTCGAACC TGACGGGAGC GGAGATCTAC 
    TCGCTTAGCT CGTCGCGGAA CCCAACCCCG CGGGGCTCCA ACTTCAACCA 
    CGCCGACTTC TTCGCCATGG TCGGCGGCGG GCCACCGCCC CCGACGCCCG 
    CTGCGGTGCG CGGCTCGAGC TTCGGCGCCT CCGAGCTCTA CTCGCTGCAA 
    TCGTCGCGGG GCCCAACCCC GAGGCAGTCC AACTTCGACG AGCACTCGGC 
    ACGGCCACCG AAACCACCGG CAACGACCAC GGGGGCACTC AACCACGATG 
    CCAAGGAGCT CCACATGTTC GTGTGGAGCT CGAGCGCGTA TCCCGTCTCA 
    GAAGTCAGCG GCCTGCCTGT GTTCAGTGGC GGCGGCGGCG GCGGCGCTCT 
    CGACGTCGGC GCCAAGGAAA TCCACATGGT CATCCCCGCC GACCTGCCGC 
    AGAACAACGG CTCAGGCAAA GAGCACGAGG AGTACGGCGC AGTGGCATTG 
    GGTGGCGGCG GCGGCGGAGA GAACTTCAGC TTCGGAGGCG GCAAGACGGT 
    GGACGGCGCC GAGGCAGTAG ACGAGGAGGC GGCCTTGCCT GACGGGCTGA 
    CGAAGATGGG GTCGAGCTCG ACGGCGGAGC TGCACCCGAA GGTCGTCGAC 
    GTCGACGGAC CGAACGCCGG CGGCGGCGCC GCGGGCGCGG GGCAGTACCA 
    AATGCCGCCG GCGAGCGTGA TGACACGCCT CATCCTCATA ATGGTGTGGC 
    GCAAGCTCAT CCGCAACCCC AACACTTACT CCAGCCTCCT CGGCCTCGCC 
    TGGTCCCTCG TCGCCTTCCG GTGGCACGTC TCCATGCCAG CAATCGTCGA 
    GAAGTCCATC TCCATTCTCT CGGACGCAGG CCTGGGGATG GCCATGTTTA 
    GCCTGGGATT GTTCATGGCG CTGCAGCCCA GCATCATCGC GTGTGGCAAA 
    TCAGCCGCCG TCGTCTCCAT GGCCGTCCGC TTCCTCGCGG GCCCTGCCGT 
    CATGGCCGCC GCGTCAATCG CCATCGGACT CCGCGGGACG CTCCTGCACG 
    TCGCCATTGT TCAGGCGGCT CTACCACAAG GGATTGTGCC TTTTGTTTTT 
    GCAAAAGAAT ACAATGTCCA CCCGGCCATC CTGAGCACAG CGGTAATTTT 
    TGGCATGCTA ATAGCTCTTC CAATCACATT GCTGTACTAC ATCCTTCTTG 
    GACTATGATC AAGAAAGCTT ATGGACGCTC TCACATAAAA CGGAAGAAAT 
    GGGGGCAAAG AGAGAGAAAA AAAAGCGATC CTGTCCATCT CAAACAGCGT 
    ATGCTTATAT GTATAGCCTG TTGTCGGACA TTGCCCATGA TGACAAGACA 
    ACGAAGTTGT TACAGAGCTA TATATCTCTG CGACATTTGT ACAAGAGATA 
    ACGACAGAAT GTACTCAAAT ATAACCGATA TTAGATATGT GTTCTGTTAA 
    AGATCTC

    Gene models with high sequence identity

    1. AT1G70940.1 [+] show detail - Auxin efflux carrier family protein
      E-value: 0; Score: 659.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Auxin efflux carrier, subgroup 9.2e-275
    HMMPfam Auxin efflux carrier 5.8e-169

    See the detailed result >

    AT1G70940.1

    Model type
    Protein coding
    Short Description
    Auxin efflux carrier family protein
    Curator Summary
    A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.
    Computational Description
    PIN-FORMED 3 (PIN3); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G23080.1); Has 1983 Blast hits to 1757 proteins in 550 species: Archae - 37; Bacteria - 1198; Metazoa - 14; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR