K30636

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30636

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30636

Determination of introduced cDNA(s)

J013034D14 - Rice Full-length cDNAs - Original: J013034D14

full reading [+] show sequence

GCTCCTTGCT CCGCCTCCAC TTAGCTTGAG ACCGCTTTAT TCCTCGCTCA 
GGGAGGAGGA GGAGAAGGCG AAGGCGAAGC AAAGCAAAAC CTCGGAAGAG 
CGGCAGAGCC CACTCCACAC GCGGAGAGGA GACCACGCCG CCGCCGGAAG 
CCATGGCCGC CGCCACCGCC GCCGCCTTCG CGGAGCCCAA GACCAAGTAC 
GATCGCCAGC TCAGGATATG GGGTGATCAA GGACAGGCTG CACTGGAGAA 
GGCTAGCATA TGCTTGCTTA CCTGTGGCCC TACAGGAACT GAAGCGATGA 
AGAACCTTGT GCTTGGAGGA GTAGGGAGTG TTACTGTTGT TGATGGTTCC 
AAAGTTGAAC AATCTGACAT GGGAAACAAT TTCCTGTTGG ATGCAGAATG 
CTTGGGGCAA TCAAGAGCAA AATCTGTATG TTCGTTCCTG CAAGAGCTGA 
ATGATGCTGT AAATGCCAAG TTTGTCGAGG AGTCTCCTCT GGCTCTCATA 
GACACAAACC CTTCATTCTT TTCCCAATTT ACCGTAGTCA TTGCTACTCA 
GCTTCCAGAG AGATCTTTAC TGAAACTAGA TGATATCTGC AGGAAAGCAA 
ATATTGTGTT GGTTGCTGCA CGTTCATATG GTCTAACTGG TCTAGTCAGG 
ATCAGCGTTA AGGAGCACAA TGTTATAGAA TCAAAACCGG ACCACTTCCT 
GGATGATTTA CGCCTTCACA ATCCATGGGT TGAACTCAAG CAATTTGCAA 
AGTCAATTGA TATAAATGAT AAAGATCCTG TTGTGCACAA GCACACTCCC 
TACATTGTTA TCCTTGTGAG GCTTGCAGAA AAATGGGCAG ATGCACATGA 
TGGGCGCTTA CCTTCGACTA GGCAAGAGAA AAATGAATTC AAGGCACTGA 
TTCGAGAATA TATGCTTAAT TTAGATGAAG AAAACTACAA AGAAGCAGTG 
GAGTCCTCGT ATAAAGTCTC TGTTACTCCA GGGATCAGTG ATGAGATCCG 
TCAGATAATT GATGATAGCT CCGCTGAAGT GAATTCATCT TCTTCAGATT 
TCTGGGTTTT AGTGGCTGCT TTGAAGGAAT TTATTGCAAA TGAGGGCAAC 
GGTGAGCTAC CTCTTGAGGG GACGATACCT GATATGACTT CACTTACTGA 
GTACTATGTT AGCCTGCAAA AGATTTACCA AGCTAAGGCT GAATCTGACT 
GCCTTGCCTT GGAGCATCAT GTAAAGGATA TCTTGAAGCG AATTGATAGA 
GACCCTGATT CTATTTCACG GGCATACATA AAAACATTTT GCAAAAATGC 
TAGAAAACTC AGAGTCTGTA GGTACCGCAG TATGGAGGAA GAGTTTAGCT 
CTCCTGTTCT TTCTGAAGTT CAAATATACT TCACCGATGA AGACTACTGC 
TTTGCAATGA ACTTCTATGT TCTGCTACGT GCTGTTGATC GACTTGCAGC 
CAACTATAAC AGATGCCCTG GAATCTTTGA AAGTGAGATT GATGAGGATG 
TGCCTAGGCT GAAGACAGCT GCTGTTTCAG TAATGAGTGA GATGGGTATG 
AACGGGGCAC CTTTGTCTGA AGACCTGATT ACTGAAATGT GCCGGTTTGG 
GGGTGCAGAG ATTCATCCCG TGGCTGCCTT CATTGGCGGA GTAGCATCCC 
AAGAAGTAAT TAAGCTGGTC ACCAAACAGT TTGTGCCTTT GCTGGGAACA 
TTTATATTCA ACGGGATTGA TCACAAATCT CAAGTTTTGG CGTTATAACA 
TCAATCTGGT ATAGAGCTTT TCGGAACCTC ACCCAATTAA TTACATTAGA 
GTTGCCCCAG ATTTTGTATT ATGGCCTTCC GGTGCAATGA AAATCACTTG 
TCCATATAAA TGATCATTGT CAGATTTGGA ATTATCATCG TATTTACATG 
GGAAAAGGTC AAAATACCCC TTGAAACAGT ATGAATTTTG

Gene models with high sequence identity

AT1G05180.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 675.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	APP BINDING PROTEIN 1	4e-142
HMMPanther	UBIQUITIN-ACTIVATING ENZYME E1	4e-142
Gene3D	NAD(P)-binding domain	5.9e-74
superfamily	Molybdenum cofactor biosynthesis, MoeB	2e-131
Coil	coiled-coil	0
HMMPfam	UBA/THIF-type NAD/FAD binding fold	2.6e-12

See the detailed result >

AT1G05180.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary: Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.
Computational Description: AUXIN RESISTANT 1 (AXR1); CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1); Has 6539 Blast hits to 5902 proteins in 1375 species: Archae - 158; Bacteria - 2625; Metazoa - 1326; Fungi - 867; Plants - 442; Viruses - 0; Other Eukaryotes - 1121 (source: NCBI BLink).
Link: InterPro Scan - TAIR