K30643

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30643

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30643

Determination of introduced cDNA(s)

  • J013052L05 - Rice Full-length cDNAs - Original: J013052L05

    full reading [+] show sequence

    Nucleotide sequence: J013052L05 - full reading 
    GAGCTCCTCT TTCGCTTTAG CCGCAGCTGC TTCGCTCTGC TTTCTCCGTA 
    GGGTTTATCC CTTTGCTTCT CCTCGTCTCC CTCCCCCTCG CACGCAAAGG 
    CACAAAGCCC GGATTCCACC GCCGGAGCCG ACCCGCTTCG AGGCGAATCG 
    AGAGTTAGCT TTCCAGCCAG CAATCGAGGA TGTCGTCGGT GCAGCTCTCC 
    GGTGCCGGAG TCGCCGCGGT GGCCTTCACC AAGAATGGCG CGTCTTCCTT 
    CGACGGGCTC CGCCTCGCGC CGCCATCTGT GCGAGTCTGC TCCTCCAGGC 
    GCCCGTCTCG TAGCCTCGTC GTCAAGGCCG CCACGGTCGT CACCCCAAAG 
    TATACCTCGC TCAAGCCTCT GGGAGACAGA GTGCTTGTGA AGCTTGGTGC 
    TGCAGAGGAG AAGACTGTTG GTGGGATTCT GCTTCCGTCA ACCGCACAGT 
    CTAAGCCTCA GGGAGGTGAG GTTGTTGCTG TTGGAGAGGG AAGAACTATT 
    GGGGATAAGA AAGTTGAGGT CAGCTTGCAG ATTGGGGCTG AAGTTGTATA 
    TTCAAAATAT GCTGGGACTG AGGTGCAATT TAACGACACC AAACATCTTA 
    TTCTAAAAGA GGATGATATC ATTGGTGTTC TTGAGACTGA TGATGTCAAA 
    GATATGAAGC CCCTTAATGA CCGGGTTCTC ATCAAGGTTG CTGAGGCTGA 
    AGACAAAACT GCTGGTGGCC TTATTCTCAC TGAAACCACT AAGGAGAAGC 
    CATCAATCGG AACAGTTGTA GCCGTTGGTC CAGGCCCTCT TGATGATGAA 
    GGCAAGAGGC AGCCATTGTC AGTTTCAGCG GGCAGCACTG TGATTTGTTT 
    CAATTTTGAG TTCAGAATAG ACGGTAGCAG GTGGTAATGG TTGCCATGTG 
    GTGATCTTCA CTCTGCGGAG ATGCTGTCTT TGATAATCCT AGAATTCGAA 
    CGCAACAATT TGCAGATCTC CTACGGGATC AACATTCCAC TGTGACTGAT 
    TTTTATTTAT AAAAGTTTGT TTTGTTTC

    Gene models with high sequence identity

    1. AT5G20720.3 [+] show detail - chaperonin 20
      E-value: 6e-77; Score: 284.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Chaperonin Cpn10, subgroup 1.3e-24
    FPrintScan Chaperonin Cpn10, subgroup 1.3e-24
    FPrintScan Chaperonin Cpn10, subgroup 1.3e-24
    FPrintScan Chaperonin Cpn10, subgroup 1.3e-24
    HMMPIR Chaperonin 21, chloroplast 1.1e-129
    HAMAP Chaperonin Cpn10, subgroup 22.159
    superfamily GroES-like 4e-31
    superfamily GroES-like 7.7e-21
    HMMSmart Chaperonin Cpn10, subgroup 3.5e-39
    HMMSmart Chaperonin Cpn10, subgroup 8.4e-14
    Gene3D Chaperonin Cpn10 5.1e-26
    Gene3D Chaperonin Cpn10 4.9e-16
    PatternScan Chaperonin Cpn10, conserved site 0
    PatternScan Chaperonin Cpn10, conserved site 0
    HMMPanther Chaperonin Cpn10, subgroup 3.2e-30
    HMMPfam Chaperonin Cpn10 1.4e-27
    HMMPfam Chaperonin Cpn10 2.2e-19

    See the detailed result >

    AT5G20720.3

    Model type
    Protein coding
    Short Description
    chaperonin 20
    Curator Summary
    Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.
    Computational Description
    chaperonin 20 (CPN20); CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin 21, chloroplast (InterPro:IPR017416), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chaperonin 10 (TAIR:AT1G14980.1).
    Link
    InterPro Scan - TAIR