K30704

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30704

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30704

Determination of introduced cDNA(s)

  • J013052O05 - Rice Full-length cDNAs - Original: J013052O05

    full reading [+] show sequence

    Nucleotide sequence: J013052O05 - full reading 
    TTCTGCTGTT GAGGTTTTAG TTCACAAGGG TGAGTCTGGA GTAGCTTGGT 
    TTTCTGCCAA AGTTCTTGAT ATAAACAATG ATAGTGCATG TATCAGCTAC 
    GACTCTCACA CTGAAGAAAC TGATCTTCGC AAAGAATGGG TGCCATTGAG 
    ACAGGAAGGG GAGAAGGCAC CTCAAATCCG CCTTGCTCAT CCTGCAACTG 
    TTTCTAGATT TAAAGGAACT AGGAAGCGCC GTAGGGACAC ATCAGGAAAT 
    TACTCTTGGG CTATTGGTGA TCATGTGGAC GTATTGATTG AAGATAGTTG 
    GCGAGAGGGA ATTATTTCTC GCAACCGTGA TGGTGATGAA ACAAAGCTTA 
    CCGTACAATT TTCAGGAACC AGTGATTCCT TAGTTGTTGA TGCTTGGAAT 
    CTTCGCCCAT CACTTGTTTG GAACGATGGG CAGTGGATAG AGTGGTCCCG 
    AGGGAAGACG GTTGATTGTA ATAAGGGTGA TTCTCCTCAT GAGAAACGGC 
    AAAGAACAAA AGGTAATGAT CATGTACCTA TTGGTGGAGC AGCAGCAGGC 
    CCTTCTATGG ATACGAGCAC AAATGCTGCA GCAAAACCAG AGGAGCCAAA 
    GCCATTGGCT TTATCTGATA GGGACATGGT TTTCAACATC GGAAAGAGGG 
    TAGTTGAGAG TAAAACTGAT GGTGTTGCTT TCAAGCGACC TGGACTTCGG 
    AAAGAAGGAT CACGGGTAGT TGGTGTTCCA AAACCTGGAA AGAAGAAAAA 
    GTTTATGGAA GTAAGCAAAC ACTATGATGC AGATCAAGCT GATAAAATTT 
    CTGAGGGTAA TGCATCTACC AGACCTGTGA AACATTTGGT GCCAAATGTG 
    CCAAGACCAC GGGAAGGTAC TTCTAAAGTT GACCAGAAAG GAAAGAGGAT 
    AGGGGAGATG AGATCGAGAG TACCTAAATC TACAAAGTCT CAGGATGGTG 
    CAACTAACAT CATTCCTGGC AAGGGACCTT TATCCATGTC TGCCCCAAGC 
    ACTGGTGTTT TCGAAAGTAG TCATACATTT ATAGGAAGTA CAATAGGTTC 
    TTCCAACAAC ATGAACCTCT CTGTAGAAAA GAATAGTTCT GTCCATGGCG 
    TTGGCCTTAG ATCTGAAGAT TCTTCTGTTT CTGAACCACA CATCCAAGCT 
    GCATCTGCTG CTCCTACTTC CAGGAAGAAT TTAACCACTA CTGATCGAGC 
    TAAAAGGAAA CTTGTTCCTT CTATGGATAA TTCGAACAGG ACCACAAACA 
    AAACATCTGA AATTCCAGGG AAGAGTGCTG ATTCTACTGA ACCCAGAAGG 
    TCGAACCGCC GAATTCAACC AACCTCACGG TTACTGGAGG GTCTGCAGAG 
    TTCCCTTATA GTTTCCAAAG TTCCAGGCGA AAAGGGTCCT AGGACTAACT 
    ACAGAAGTGC TTCCTCAAGA GGGCGAAACC TTGGCTGAGA AAAAGGCTTT 
    GCTGCGCTGT TGTTGGGATA ATTCTCGTTT GTACATAACT GGTTAGCTCG 
    ATGGAGGCAA AAGAGGATAG GATTGGAGTA AAGACTTCCC CGGAGAAGAT 
    GTGCTCAGGT GTATTATATG CTAGCTTAAG TTAGTGGGGT TTATTTTTTG 
    GATTTGTACT GGACACTTGT GTTATGTGAT GTAGAGTAGA CATTAATCAT 
    CCAAAAACCA CCGTTTAATC TGTATGGATA CAGCGAAAGA GAAATTGGAC 
    ACGGTTTAAA CTCATCGTCT GTGGTAAACC ATTTGACGGA TGTATTAACC 
    TTCTCCGTCC TTTTGTGGAA TTGATGGATT GCTACCTTTT GTTTCG

    Gene models with high sequence identity

    1. AT4G17330.1 [+] show detail - G2484-1 protein
      E-value: 5e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Agenet 1.9e-11
    HMMSmart Tudor-like, plant 4.4e-13

    See the detailed result >

    AT4G17330.1

    Model type
    Protein coding
    Short Description
    G2484-1 protein
    Curator Summary
    gene of unknown function expressed in seedlings, flower buds and stems
    Computational Description
    G2484-1 protein (G2484-1); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 6169 Blast hits to 4010 proteins in 631 species: Archae - 30; Bacteria - 1624; Metazoa - 1931; Fungi - 976; Plants - 400; Viruses - 26; Other Eukaryotes - 1182 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR