K30704

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30704

Determination of introduced cDNA(s)

J013052O05 - Rice Full-length cDNAs - Original: J013052O05

full reading [+] show sequence

TTCTGCTGTT GAGGTTTTAG TTCACAAGGG TGAGTCTGGA GTAGCTTGGT 
TTTCTGCCAA AGTTCTTGAT ATAAACAATG ATAGTGCATG TATCAGCTAC 
GACTCTCACA CTGAAGAAAC TGATCTTCGC AAAGAATGGG TGCCATTGAG 
ACAGGAAGGG GAGAAGGCAC CTCAAATCCG CCTTGCTCAT CCTGCAACTG 
TTTCTAGATT TAAAGGAACT AGGAAGCGCC GTAGGGACAC ATCAGGAAAT 
TACTCTTGGG CTATTGGTGA TCATGTGGAC GTATTGATTG AAGATAGTTG 
GCGAGAGGGA ATTATTTCTC GCAACCGTGA TGGTGATGAA ACAAAGCTTA 
CCGTACAATT TTCAGGAACC AGTGATTCCT TAGTTGTTGA TGCTTGGAAT 
CTTCGCCCAT CACTTGTTTG GAACGATGGG CAGTGGATAG AGTGGTCCCG 
AGGGAAGACG GTTGATTGTA ATAAGGGTGA TTCTCCTCAT GAGAAACGGC 
AAAGAACAAA AGGTAATGAT CATGTACCTA TTGGTGGAGC AGCAGCAGGC 
CCTTCTATGG ATACGAGCAC AAATGCTGCA GCAAAACCAG AGGAGCCAAA 
GCCATTGGCT TTATCTGATA GGGACATGGT TTTCAACATC GGAAAGAGGG 
TAGTTGAGAG TAAAACTGAT GGTGTTGCTT TCAAGCGACC TGGACTTCGG 
AAAGAAGGAT CACGGGTAGT TGGTGTTCCA AAACCTGGAA AGAAGAAAAA 
GTTTATGGAA GTAAGCAAAC ACTATGATGC AGATCAAGCT GATAAAATTT 
CTGAGGGTAA TGCATCTACC AGACCTGTGA AACATTTGGT GCCAAATGTG 
CCAAGACCAC GGGAAGGTAC TTCTAAAGTT GACCAGAAAG GAAAGAGGAT 
AGGGGAGATG AGATCGAGAG TACCTAAATC TACAAAGTCT CAGGATGGTG 
CAACTAACAT CATTCCTGGC AAGGGACCTT TATCCATGTC TGCCCCAAGC 
ACTGGTGTTT TCGAAAGTAG TCATACATTT ATAGGAAGTA CAATAGGTTC 
TTCCAACAAC ATGAACCTCT CTGTAGAAAA GAATAGTTCT GTCCATGGCG 
TTGGCCTTAG ATCTGAAGAT TCTTCTGTTT CTGAACCACA CATCCAAGCT 
GCATCTGCTG CTCCTACTTC CAGGAAGAAT TTAACCACTA CTGATCGAGC 
TAAAAGGAAA CTTGTTCCTT CTATGGATAA TTCGAACAGG ACCACAAACA 
AAACATCTGA AATTCCAGGG AAGAGTGCTG ATTCTACTGA ACCCAGAAGG 
TCGAACCGCC GAATTCAACC AACCTCACGG TTACTGGAGG GTCTGCAGAG 
TTCCCTTATA GTTTCCAAAG TTCCAGGCGA AAAGGGTCCT AGGACTAACT 
ACAGAAGTGC TTCCTCAAGA GGGCGAAACC TTGGCTGAGA AAAAGGCTTT 
GCTGCGCTGT TGTTGGGATA ATTCTCGTTT GTACATAACT GGTTAGCTCG 
ATGGAGGCAA AAGAGGATAG GATTGGAGTA AAGACTTCCC CGGAGAAGAT 
GTGCTCAGGT GTATTATATG CTAGCTTAAG TTAGTGGGGT TTATTTTTTG 
GATTTGTACT GGACACTTGT GTTATGTGAT GTAGAGTAGA CATTAATCAT 
CCAAAAACCA CCGTTTAATC TGTATGGATA CAGCGAAAGA GAAATTGGAC 
ACGGTTTAAA CTCATCGTCT GTGGTAAACC ATTTGACGGA TGTATTAACC 
TTCTCCGTCC TTTTGTGGAA TTGATGGATT GCTACCTTTT GTTTCG

Gene models with high sequence identity

AT4G17330.1 [+] show detail - G2484-1 protein
E-value: 5e-57; Score: 219.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Agenet	0.000000000019
HMMSmart	Tudor-like, plant	0.00000000000044

See the detailed result >

AT4G17330.1

Model type: Protein coding
Short Description: G2484-1 protein
Curator Summary: gene of unknown function expressed in seedlings, flower buds and stems
Computational Description: G2484-1 protein (G2484-1); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 6169 Blast hits to 4010 proteins in 631 species: Archae - 30; Bacteria - 1624; Metazoa - 1931; Fungi - 976; Plants - 400; Viruses - 26; Other Eukaryotes - 1182 (source: NCBI BLink).
Link: InterPro Scan - TAIR