K30712

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30712

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30712

Determination of introduced cDNA(s)

  • J033132H19 - Rice Full-length cDNAs - Original: J033132H19

    full reading [+] show sequence

    Nucleotide sequence: J033132H19 - full reading 
    GTTGCTTTCA ACCTTTTGTT CCACATACCA GTGTGGACCG GGGTTCTCAT 
    TGCTGGCTCT AGCACGCTTC TTCTTCTTGG ACTGCAAAGA TATGGGGTAA 
    GGAAACTGGA GGTTGTGGTC GCGCTATTGG TGTTTGTCAT GGCAGGGTGC 
    TTCTTCGTGG AGATGAGCAT AGTCAAGCCT CCGGTTAATG AGGTCCTTCA 
    AGGATTATTC ATCCCCAGGC TCAGTGGGCC CGGTGCCACA GGAGACTCCA 
    TTGCCCTTCT TGGGGCTCTT GTAATGCCGC ACAATCTATT CTTGCACTCT 
    GCCCTGGTGC TGTCGAGGAA TACACCCGCA TCAGCAAAAG GAATGAAGGA 
    TGTCTGTAGG TTCTTCCTCT TTGAGAGTGG GATAGCTCTT TTCGTGGCTC 
    TGCTTGTCAA CATTGCAATC ATCTCTGTCT CCGGCACTGT ATGTAATGCA 
    ACCAACCTTA CCAGAAGATG CTGTAAAATG CAGCGACCTT ACATTGGACT 
    CCTCATCCTT CCTCCTCAGG AATGTGCTAG GAAAGTCAAG TGCGACAGTG 
    TACGGTGTAG CACTCTTGGC TTCTGGACAG AGCTCGACCA TTACTGGCAC 
    TTATGCTGGG CAATATGTTA TGCAGGGGTT CCTAGACATC AAAATGAAAC 
    AGTGGCTTCG GAACCTGATG ACACGCAGCA TTGCCATTGT GCCTAGCTTA 
    ATCGTCTCCA TCATTGGAGG GTCTAGTGGC GCCGGTCGTC TCATCGTCAT 
    TGCATCGATG ATTCTATCCT TTGAGCTACC ATTTGCTCTG ATCCCTCTTC 
    TCAAGTTCAG CAGCAGCAGC AACAAGATGG GTGAAAACAA GAACTCCATC 
    TATATTGTTG GATTCTCCTG GGTGCTGGGG TTCGTCATCA TCGGGATAAA 
    CATCTACTTC CTCAGCACAA AGCTGGTCGG CTGGATCCTC CACAACGCGC 
    TCCCGACATT CGCCAACGTG CTCATCGGCA TCGTGCTGTT CCCGCTCATG 
    CTGCTCTACG TCGTCGCCGT GATCTACCTG ACGTTCAGGA AGGACACCGT 
    CAAGTTCGTG TCTCGTCGTG AGCTGCAGGC CGGCGACGAC ACCGAGAAAG 
    CACAGGTAGC CACCTGCGTC GCCGACGAGC ACAGCAAAGA GCCACCCGTG 
    TAGTACCCTT CCAGACCGGT TACCGGTGTT GGCTGGTTTT TATTGGATAG 
    ATGTTTAGGT CCAATTTTTT TTATATAAAA AATCCAATAG ATGTTTAGGT 
    CCAAATTTTT GAATTCAAAA ACCGGTTAGC AGTGATAACC GGCTGAAATT 
    TTGGCCCATG GGAGTAGATT GTTGCTTTTT TTCTTAGTGA TTAGTTATTG 
    GCAGATTG

    Gene models with high sequence identity

    1. AT1G80830.1 [+] show detail - natural resistance-associated macrophage protein 1
      E-value: 2e-103; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Natural resistance-associated macrophage protein 2.2e-43
    HMMPfam Natural resistance-associated macrophage protein 1.5e-39
    HMMPanther METAL TRANSPORTER NRAMP (NRAMP) 3.3e-85
    HMMPanther Natural resistance-associated macrophage protein 3.3e-85
    HMMPanther METAL TRANSPORTER NRAMP (NRAMP) 1.1e-123
    HMMPanther Natural resistance-associated macrophage protein 1.1e-123
    FPrintScan Natural resistance-associated macrophage protein 1e-21
    FPrintScan Natural resistance-associated macrophage protein 1e-21
    FPrintScan Natural resistance-associated macrophage protein 1e-21
    FPrintScan Natural resistance-associated macrophage protein 2.3e-27
    FPrintScan Natural resistance-associated macrophage protein 2.3e-27
    FPrintScan Natural resistance-associated macrophage protein 2.3e-27

    See the detailed result >

    AT1G80830.1

    Model type
    Protein coding
    Short Description
    natural resistance-associated macrophage protein 1
    Curator Summary
    Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.
    Computational Description
    natural resistance-associated macrophage protein 1 (NRAMP1); CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP metal ion transporter 6 (TAIR:AT1G15960.1); Has 5566 Blast hits to 5511 proteins in 1695 species: Archae - 118; Bacteria - 4154; Metazoa - 357; Fungi - 273; Plants - 337; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR