K30802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30802

Determination of introduced cDNA(s)

  • J013045C05 - Rice Full-length cDNAs - Original: J013045C05

    full reading [+] show sequence

    Nucleotide sequence: J013045C05 - full reading
    GAGCGTGGTC AGTTGTGGCA CTCATCAGAG CTGGGAGCCA TGGCCATGGA 
    GAAGAGCCGG GTCCTCATCG TCGGCGGCAG CGGCTACATC GGCCGGCGGA
    TCGTTGCGGC GAGCTTGGCG GAGGGCCACC CCACCTTCGT CCTGCTGCGG
    CCGGAGATCG GCCTCAACAT CGACAAGCTC CAGATACTGC TGGCCTTCAA
    GGCGCAGGGC GCGCGGCTCC TCGAGGCGTC GCTCGACGAC CACGATGGCC
    TCGTCGCCGC CGTCCGGCAG GTGGACGTCG TCGTCTCCGC CATGTCCGGC
    GTCCACCACC GCAGCCACAA CATCTTGCTG CAGCTCAAGC TCGTCAAGGC
    CATCAAAGAA GCTGGAAATG TCAAGGTAAT TTATTTTCTA TCTGCTCAAC
    AAATTAATAC ATAATTAATT AAAAGAACAT GATTTGTCTG TGCCAATATA
    CCCAACAAAA ACAGAAATAA CATGAGCTCC TCAATTCTCA GCCACTCATT
    TTTTTTATCT CAATCTCCCT CTCCCTCTCT TCCCTTTTCC ATGGCCGCGG
    ATGGTGAGCG ATGGCAGCTT GGGAGGCAAG GCCCCTCTCC GTCTCCCTCT
    CTTCTCCCAC TCTCTCCTCT TCCCCTCTTC CATGACTAGA CGATGAGCAC
    AAGCAGGCGT CGGAGGTGAC GTTGCAGCGG TGGGATGAGG TCGAGGTCAC
    AGTGGAGCCT GTGACCTGGG GATGGCTAGA TTTATCTCTG TGGCGCACGA
    GTGAAGGAGG TAGTTGTGGA AGGGGGAGGT CTGGCGCTGA TGTTGAGCCA
    GTGTTGGAGA ACATGATGTT GATCTGGTGT TATGTGATTT TTTTTGTCTT
    GAGCTCGAGA ACTAGGTAGC GGCCATCCTT GATCTTCTTT TCTCACGATC
    AAGAAGACTA GCATGCTCAA GGACGACATC GTCGCTTCAC TGTCGGGAGC
    GCACAAGGGA GGAGCATCAG AATAGTGGAT GTGTGCGTTG TGAATTTTTA
    GTGTTTCAGT CCTTAAAATC ATTTGTTTCA TCTACTGATT TGACTGTGTT
    TCACTGTTTT TCAAGAATTG AAACATTTTT TCATTAACTG GAGCTTTATG
    GTGACCGGGC ACCAAGTTTT AAATTGAGTA TATACTTAAT TCAATTGAGT
    ATGAATTTTT TAAAAAATAT ATAGGTATAA ACATTAACTT ATTTACTAAC
    TAGTTCAAAC AAATTTGAAC TGAATTTGAA CATCTTTTTG TTAGATTTTG
    ATTCTAGCTA TATACTCCCT CCGTCCCCTA ATATAAGGGA TTTTGACGTT
    TTGCTTGCAC TGTTTGACCA TTTGTCTTAT TCAAAAATTT TGGAATTATT
    ATTTTTTGGG ACTTACTTTA TTATCCAAAG TGCTTTAAGC ATAACTTTTC
    GTTTTTTATA TTTGCACAAA TTTTTTTGAA TAAAACGAGT GGTCAAACAA
    TGCAACCAAA ATATCAAAAT CCTTTATATT ATGGGACAGA GGGAGTAGCA
    TCCAAATATA TAATTAGTTA GGTATGTAAT AATTGAATAT AAAATAAAGT
    TGAATTTGAG ATGTTTTGTC GCTAAGTATA GGTATGAATC AAATTTTTAT
    GTCTAGATAT ATACTCACAA TTTGAAAATT TTTAAAATTT TTGAGTGGAT
    TTGTGTATTT TATATATATA CCTGATAGTG GATCATCCAA TATTAACCGG
    ATTGAAAAAA CAAAATGATT AATAAATAGA TGATGTAACA ATTCATGCAT
    GCATGCAACT CGTAAATTAG TCCGCCTGTT GCATGCAAAG TAGTTAGATA
    TGCAGAACGA TTTTTGTTCT TCATAATATT CGGTATGTAC CAGAACCAAC
    GTTGAAAGAG CATATGCCTT TCCTTTTTCA GTATACGGCA CATACTGTGT
    TTTTTTGTAT GACTTAGTAT GTGCTACGTA TTAGATTTTT TGGTTGTTGA
    ACTATATGCG TTTTTTTTTA ATATCCAGTA GCAGTATATA CTTTTTTTTT
    TATAATTGTG TTTTTGTTGG GGACTTGATA TGATGATCCA AAAGTATCAG
    TACATCCTAT AAGATGCAGA AGGTATCATA TATTGAGATG AGAATATCTA
    GAATAGAAAA ATATTTGAAT GAGCCGCGGT TCTAATCTAG ATATAAACGA
    AAGCATATAC TACTAGTTCA GTATATACCA CTTAAGATTA CCAGGTAGGT
    ACTGAACGAT ACATCCCTAA AATTCAAGGT GCATGTGCAC ATTGTAGCAT
    GCAATCCATG AGACATGTAA TTATTTTAAG GATCCAGTAT AGTAGTATAT
    ATTTTCAGTT AGTACTAGAA TATACCTTTT TGCTTAGTAG TATAGCAGTA
    GTATATCCTT TTTTTTATTT AATAGCAGTA TATACTTATT TTTAGTTAGG
    AGTAGTATAT ACTTATTTTT CAGTCAATAG CAGTATATAC TTATTTTTCA
    ATTAGGAGTG GTATATACTT ATATTCAGTC AATAGCAGTA TATATTTTTT
    TAGATAGTAG TACATACTGA ATTTTAGCTA GTACTACATA CTTATCTTAT
    CTTTTTTAGT TAGTAGTATA TACTGATTTT TCGTTAGTAG TACATACTTA
    TTTTTTAAGT TAGTAGATAG TATATGTACT CATTTTAATT AGTTCGTACA
    AGTATCTACT GTCTTTTTCA ATTAGTAGCA GTATATACTT ACTTTTACAT
    AATATACATA CTTTCTCTGT TTCACAATGT AAGTTATTTT AGCATTTTTC
    ACATTCATAT TGTCTAGATT CATTAACATC AACATGAATA TGGGAAATGT
    TAGAATGACT TACATTATGA AACAGAGGGA GTAACATATA ACAGCTGCTA
    CATGCAAGTA TGATGATTCA AGTACC

    Gene models with high sequence identity

    1. AT1G32100.1 [+] show detail - pinoresinol reductase 1
      E-value: 3e-31; Score: 134.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 0.00000000002
    superfamily NAD(P)-binding domain 1.6e-28
    HMMPfam NmrA 1.9e-28

    See the detailed result >

    AT1G32100.1

    Model type
    Protein coding
    Short Description
    pinoresinol reductase 1
    Curator Summary
    Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.
    Computational Description
    pinoresinol reductase 1 (PRR1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: pinoresinol reductase 2 (TAIR:AT4G13660.1); Has 2085 Blast hits to 2085 proteins in 479 species: Archae - 27; Bacteria - 779; Metazoa - 2; Fungi - 496; Plants - 600; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR