K30802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30802

Determination of introduced cDNA(s)

  • J013045C05 - Rice Full-length cDNAs - Original: J013045C05

    full reading [+] show sequence

    Nucleotide sequence: J013045C05 - full reading 
    GAGCGTGGTC AGTTGTGGCA CTCATCAGAG CTGGGAGCCA TGGCCATGGA 
    GAAGAGCCGG GTCCTCATCG TCGGCGGCAG CGGCTACATC GGCCGGCGGA 
    TCGTTGCGGC GAGCTTGGCG GAGGGCCACC CCACCTTCGT CCTGCTGCGG 
    CCGGAGATCG GCCTCAACAT CGACAAGCTC CAGATACTGC TGGCCTTCAA 
    GGCGCAGGGC GCGCGGCTCC TCGAGGCGTC GCTCGACGAC CACGATGGCC 
    TCGTCGCCGC CGTCCGGCAG GTGGACGTCG TCGTCTCCGC CATGTCCGGC 
    GTCCACCACC GCAGCCACAA CATCTTGCTG CAGCTCAAGC TCGTCAAGGC 
    CATCAAAGAA GCTGGAAATG TCAAGGTAAT TTATTTTCTA TCTGCTCAAC 
    AAATTAATAC ATAATTAATT AAAAGAACAT GATTTGTCTG TGCCAATATA 
    CCCAACAAAA ACAGAAATAA CATGAGCTCC TCAATTCTCA GCCACTCATT 
    TTTTTTATCT CAATCTCCCT CTCCCTCTCT TCCCTTTTCC ATGGCCGCGG 
    ATGGTGAGCG ATGGCAGCTT GGGAGGCAAG GCCCCTCTCC GTCTCCCTCT 
    CTTCTCCCAC TCTCTCCTCT TCCCCTCTTC CATGACTAGA CGATGAGCAC 
    AAGCAGGCGT CGGAGGTGAC GTTGCAGCGG TGGGATGAGG TCGAGGTCAC 
    AGTGGAGCCT GTGACCTGGG GATGGCTAGA TTTATCTCTG TGGCGCACGA 
    GTGAAGGAGG TAGTTGTGGA AGGGGGAGGT CTGGCGCTGA TGTTGAGCCA 
    GTGTTGGAGA ACATGATGTT GATCTGGTGT TATGTGATTT TTTTTGTCTT 
    GAGCTCGAGA ACTAGGTAGC GGCCATCCTT GATCTTCTTT TCTCACGATC 
    AAGAAGACTA GCATGCTCAA GGACGACATC GTCGCTTCAC TGTCGGGAGC 
    GCACAAGGGA GGAGCATCAG AATAGTGGAT GTGTGCGTTG TGAATTTTTA 
    GTGTTTCAGT CCTTAAAATC ATTTGTTTCA TCTACTGATT TGACTGTGTT 
    TCACTGTTTT TCAAGAATTG AAACATTTTT TCATTAACTG GAGCTTTATG 
    GTGACCGGGC ACCAAGTTTT AAATTGAGTA TATACTTAAT TCAATTGAGT 
    ATGAATTTTT TAAAAAATAT ATAGGTATAA ACATTAACTT ATTTACTAAC 
    TAGTTCAAAC AAATTTGAAC TGAATTTGAA CATCTTTTTG TTAGATTTTG 
    ATTCTAGCTA TATACTCCCT CCGTCCCCTA ATATAAGGGA TTTTGACGTT 
    TTGCTTGCAC TGTTTGACCA TTTGTCTTAT TCAAAAATTT TGGAATTATT 
    ATTTTTTGGG ACTTACTTTA TTATCCAAAG TGCTTTAAGC ATAACTTTTC 
    GTTTTTTATA TTTGCACAAA TTTTTTTGAA TAAAACGAGT GGTCAAACAA 
    TGCAACCAAA ATATCAAAAT CCTTTATATT ATGGGACAGA GGGAGTAGCA 
    TCCAAATATA TAATTAGTTA GGTATGTAAT AATTGAATAT AAAATAAAGT 
    TGAATTTGAG ATGTTTTGTC GCTAAGTATA GGTATGAATC AAATTTTTAT 
    GTCTAGATAT ATACTCACAA TTTGAAAATT TTTAAAATTT TTGAGTGGAT 
    TTGTGTATTT TATATATATA CCTGATAGTG GATCATCCAA TATTAACCGG 
    ATTGAAAAAA CAAAATGATT AATAAATAGA TGATGTAACA ATTCATGCAT 
    GCATGCAACT CGTAAATTAG TCCGCCTGTT GCATGCAAAG TAGTTAGATA 
    TGCAGAACGA TTTTTGTTCT TCATAATATT CGGTATGTAC CAGAACCAAC 
    GTTGAAAGAG CATATGCCTT TCCTTTTTCA GTATACGGCA CATACTGTGT 
    TTTTTTGTAT GACTTAGTAT GTGCTACGTA TTAGATTTTT TGGTTGTTGA 
    ACTATATGCG TTTTTTTTTA ATATCCAGTA GCAGTATATA CTTTTTTTTT 
    TATAATTGTG TTTTTGTTGG GGACTTGATA TGATGATCCA AAAGTATCAG 
    TACATCCTAT AAGATGCAGA AGGTATCATA TATTGAGATG AGAATATCTA 
    GAATAGAAAA ATATTTGAAT GAGCCGCGGT TCTAATCTAG ATATAAACGA 
    AAGCATATAC TACTAGTTCA GTATATACCA CTTAAGATTA CCAGGTAGGT 
    ACTGAACGAT ACATCCCTAA AATTCAAGGT GCATGTGCAC ATTGTAGCAT 
    GCAATCCATG AGACATGTAA TTATTTTAAG GATCCAGTAT AGTAGTATAT 
    ATTTTCAGTT AGTACTAGAA TATACCTTTT TGCTTAGTAG TATAGCAGTA 
    GTATATCCTT TTTTTTATTT AATAGCAGTA TATACTTATT TTTAGTTAGG 
    AGTAGTATAT ACTTATTTTT CAGTCAATAG CAGTATATAC TTATTTTTCA 
    ATTAGGAGTG GTATATACTT ATATTCAGTC AATAGCAGTA TATATTTTTT 
    TAGATAGTAG TACATACTGA ATTTTAGCTA GTACTACATA CTTATCTTAT 
    CTTTTTTAGT TAGTAGTATA TACTGATTTT TCGTTAGTAG TACATACTTA 
    TTTTTTAAGT TAGTAGATAG TATATGTACT CATTTTAATT AGTTCGTACA 
    AGTATCTACT GTCTTTTTCA ATTAGTAGCA GTATATACTT ACTTTTACAT 
    AATATACATA CTTTCTCTGT TTCACAATGT AAGTTATTTT AGCATTTTTC 
    ACATTCATAT TGTCTAGATT CATTAACATC AACATGAATA TGGGAAATGT 
    TAGAATGACT TACATTATGA AACAGAGGGA GTAACATATA ACAGCTGCTA 
    CATGCAAGTA TGATGATTCA AGTACC

    Gene models with high sequence identity

    1. AT1G32100.1 [+] show detail - pinoresinol reductase 1
      E-value: 3e-31; Score: 134.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 2e-11
    superfamily NAD(P)-binding domain 1.6e-28
    HMMPfam NmrA 1.9e-28

    See the detailed result >

    AT1G32100.1

    Model type
    Protein coding
    Short Description
    pinoresinol reductase 1
    Curator Summary
    Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.
    Computational Description
    pinoresinol reductase 1 (PRR1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: pinoresinol reductase 2 (TAIR:AT4G13660.1); Has 2085 Blast hits to 2085 proteins in 479 species: Archae - 27; Bacteria - 779; Metazoa - 2; Fungi - 496; Plants - 600; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR