K30811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30811

Determination of introduced cDNA(s)

  • J013034J09 - Rice Full-length cDNAs - Original: J013034J09

    full reading [+] show sequence

    Nucleotide sequence: J013034J09 - full reading 
    GGCTAGCTCC CCAAGTCGAA ACGTCGTCGC CCCTCATCAT CTCCTCCTCG 
    TTGTCGCACC CCCAACCGCA CGCTGCCGCC GCTCGCTTCC TCCTCTCCTC 
    GTCTCACTCC AGAAAGCCAA GCTGCAAAGC ACTATGGCAC ATCCCATAGC 
    AATGGCAGCA TGGACACACA GCCATCGGAG CCGACCGTGG TAAAAGCTTT 
    CATCGCGGTG CCTGATATAT CGACGCCGAC ATCGAGCACG CCCCAACTCC 
    ATATGTATTT GCAGGCTATA GATGAGCTGA AAGATCTCCT TTCTTTTCAA 
    GCAAGAACAA AGTTAAGCAA GGGAAGATCC AAGAACAAGA ACACCAATGG 
    CTGACGAGTC ATGGAGGGCG CCGGCGATAG TGCAAGAGCT GGCGGCAGCC 
    GGCGTCGAGG AGCCGCCGAG CCGATACCTG CTACGGGAGA AAGACCGTTC 
    TGACGTCAAG CTGGTCGCCG CCGAGCTGCC GGAGCCCCTC CCCGTCGTTG 
    ATCTCAGCCG GCTAGATGGT GCCGAGGAGG CCACCAAGCT CAGGGTGGCT 
    CTGCAGAATT GGGGCTTCTT CCTGCTTACC AACCATGGAG TAGAAGCCTC 
    TCTGATGGAC AGCGTGATGA ACTTGTCGAG AGAGTTTTTC AACCAACCAA 
    TCGAACGGAA GCAAAAATTC AGCAACTTGA TCGATGGCAA GAACTTCCAG 
    ATTCAAGGGT ATGGAACTGA CCGGGTGGTT ACCCAAGATC AGATCCTGGA 
    CTGGTCTGAT CGGTTGCATC TCAGAGTTGA ACCCAAGGAG GAGCAAGATC 
    TTGCCTTCTG GCCTGACCAT CCTGAATCTT TCAGGGATGT TCTGAACAAG 
    TATGCATCAG GAACCAAAAG AATTAGAGAC GATATCATTC AGGCTATGGC 
    CAAGCTTCTT GAGCTTGATG AGGATTACTT CTTGGACCGA CTCAACGAAG 
    CTCCTGCATT TGCAAGATTC AACTACTACC CTCCCTGTCC AAGGCCTGAC 
    CTTGTGTTCG GCATCAGGCC TCACTCCGAC GGCACCCTCT TGACGATTCT 
    TCTCGTCGAC AAAGATGTCA GTGGCCTGCA AGTTCAGAGG GATGGCAAGT 
    GGTCCAACGT TGAGGCAACT CCTCACACAT TGCTGATCAA CTTAGGTGAC 
    ACCATGGAGG TAATGTGCAA TGGCATCTTC AGGAGCCCGG TGCACAGGGT 
    GGTGACAAAC GCCGAGAAGG AGAGGATCTC CCTGGCCATG TTATACAGCG 
    TGAACGATGA GAAAGACATT GAGCCGGCGG CTGGTTTGCT GGATGAGAAT 
    CGGCCTGCAA GATACAGGAA AGTGAGCGTC GAAGAGTTCA GGGCCGGGAT 
    CTTTGGAAAA TTCTCTCGAG GAGAGAGGTA CATCGACTCC CTGAGGATCT 
    GATCTCGAAG AGAGCATGAT TGTTGCAAGC TCAGCAGCTT TCAGTAGCAA 
    GTATTTCCTT GGGAAAACAA ACATTTTTCC CCCCTTAAGG GAATTGCTGA 
    AAACATGTCG CAAGTTCTCG TAAAGAAAAA CTTTTAAATT TAACTATGGT 
    ATAATTGTAA TATAATTACA TATGTAATAA CCCCTCCGTT TCATATTATA 
    AGACTTTCTA GCATTGTCCA CATTTATATA GATGTGGGCA ATGCCATAAA 
    GTCTTACAAT ATGAAAACGG AGGAAGTCTT GTAACTACGG TACTGCATTC 
    TTTTCAAATT ACAAATTACT TGTCATCCG

    Gene models with high sequence identity

    1. AT5G20400.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 5e-77; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Clavaminate synthase-like 2.9e-94
    FPrintScan Isopenicillin N synthase 0.0000059
    FPrintScan Isopenicillin N synthase 0.0000059
    FPrintScan Isopenicillin N synthase 0.0000059
    HMMPfam Oxoglutarate/iron-dependent oxygenase 4e-21
    Gene3D no description 2.4e-93
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 5.2e-128
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 5.2e-128

    See the detailed result >

    AT5G20400.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Curator Summary
    encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G49390.1); Has 8498 Blast hits to 8450 proteins in 980 species: Archae - 0; Bacteria - 1051; Metazoa - 121; Fungi - 1005; Plants - 4926; Viruses - 0; Other Eukaryotes - 1395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR