K30811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30811

Determination of introduced cDNA(s)

  • J013034J09 - Rice Full-length cDNAs - Original: J013034J09

    full reading [+] show sequence

    Nucleotide sequence: J013034J09 - full reading
    GGCTAGCTCC CCAAGTCGAA ACGTCGTCGC CCCTCATCAT CTCCTCCTCG 
    TTGTCGCACC CCCAACCGCA CGCTGCCGCC GCTCGCTTCC TCCTCTCCTC
    GTCTCACTCC AGAAAGCCAA GCTGCAAAGC ACTATGGCAC ATCCCATAGC
    AATGGCAGCA TGGACACACA GCCATCGGAG CCGACCGTGG TAAAAGCTTT
    CATCGCGGTG CCTGATATAT CGACGCCGAC ATCGAGCACG CCCCAACTCC
    ATATGTATTT GCAGGCTATA GATGAGCTGA AAGATCTCCT TTCTTTTCAA
    GCAAGAACAA AGTTAAGCAA GGGAAGATCC AAGAACAAGA ACACCAATGG
    CTGACGAGTC ATGGAGGGCG CCGGCGATAG TGCAAGAGCT GGCGGCAGCC
    GGCGTCGAGG AGCCGCCGAG CCGATACCTG CTACGGGAGA AAGACCGTTC
    TGACGTCAAG CTGGTCGCCG CCGAGCTGCC GGAGCCCCTC CCCGTCGTTG
    ATCTCAGCCG GCTAGATGGT GCCGAGGAGG CCACCAAGCT CAGGGTGGCT
    CTGCAGAATT GGGGCTTCTT CCTGCTTACC AACCATGGAG TAGAAGCCTC
    TCTGATGGAC AGCGTGATGA ACTTGTCGAG AGAGTTTTTC AACCAACCAA
    TCGAACGGAA GCAAAAATTC AGCAACTTGA TCGATGGCAA GAACTTCCAG
    ATTCAAGGGT ATGGAACTGA CCGGGTGGTT ACCCAAGATC AGATCCTGGA
    CTGGTCTGAT CGGTTGCATC TCAGAGTTGA ACCCAAGGAG GAGCAAGATC
    TTGCCTTCTG GCCTGACCAT CCTGAATCTT TCAGGGATGT TCTGAACAAG
    TATGCATCAG GAACCAAAAG AATTAGAGAC GATATCATTC AGGCTATGGC
    CAAGCTTCTT GAGCTTGATG AGGATTACTT CTTGGACCGA CTCAACGAAG
    CTCCTGCATT TGCAAGATTC AACTACTACC CTCCCTGTCC AAGGCCTGAC
    CTTGTGTTCG GCATCAGGCC TCACTCCGAC GGCACCCTCT TGACGATTCT
    TCTCGTCGAC AAAGATGTCA GTGGCCTGCA AGTTCAGAGG GATGGCAAGT
    GGTCCAACGT TGAGGCAACT CCTCACACAT TGCTGATCAA CTTAGGTGAC
    ACCATGGAGG TAATGTGCAA TGGCATCTTC AGGAGCCCGG TGCACAGGGT
    GGTGACAAAC GCCGAGAAGG AGAGGATCTC CCTGGCCATG TTATACAGCG
    TGAACGATGA GAAAGACATT GAGCCGGCGG CTGGTTTGCT GGATGAGAAT
    CGGCCTGCAA GATACAGGAA AGTGAGCGTC GAAGAGTTCA GGGCCGGGAT
    CTTTGGAAAA TTCTCTCGAG GAGAGAGGTA CATCGACTCC CTGAGGATCT
    GATCTCGAAG AGAGCATGAT TGTTGCAAGC TCAGCAGCTT TCAGTAGCAA
    GTATTTCCTT GGGAAAACAA ACATTTTTCC CCCCTTAAGG GAATTGCTGA
    AAACATGTCG CAAGTTCTCG TAAAGAAAAA CTTTTAAATT TAACTATGGT
    ATAATTGTAA TATAATTACA TATGTAATAA CCCCTCCGTT TCATATTATA
    AGACTTTCTA GCATTGTCCA CATTTATATA GATGTGGGCA ATGCCATAAA
    GTCTTACAAT ATGAAAACGG AGGAAGTCTT GTAACTACGG TACTGCATTC
    TTTTCAAATT ACAAATTACT TGTCATCCG

    Gene models with high sequence identity

    1. AT5G20400.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 5e-77; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Clavaminate synthase-like 2.9e-94
    FPrintScan Isopenicillin N synthase 5.9e-06
    FPrintScan Isopenicillin N synthase 5.9e-06
    FPrintScan Isopenicillin N synthase 5.9e-06
    HMMPfam Oxoglutarate/iron-dependent oxygenase 4e-21
    Gene3D no description 2.4e-93
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 5.2e-128
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 5.2e-128

    See the detailed result >

    AT5G20400.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Curator Summary
    encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G49390.1); Has 8498 Blast hits to 8450 proteins in 980 species: Archae - 0; Bacteria - 1051; Metazoa - 121; Fungi - 1005; Plants - 4926; Viruses - 0; Other Eukaryotes - 1395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR