K30817

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30817

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30817

Determination of introduced cDNA(s)

  • J023012N02 - Rice Full-length cDNAs - Original: J023012N02

    full reading [+] show sequence

    Nucleotide sequence: J023012N02 - full reading 
    GAAATTCTCC GGCGTTTCCA GTTCAAAAAT AAAAAATAAA AAATCTCCGG 
    CGCAAATCCT CCTCTCCGCC GCCGCCGCCT CCACCTCCAC CGCTCGCCCC 
    CTCGCCGCGC CTCCACTCCT CACACCACGC TCCTCCTGAC CTCCTCCCTC 
    GCGCTTCTCC GGCGGCGCCT CGCTCCTCTG CGCGGACCGT TGCCCCTGGC 
    CGAGCGCGGC GCGGCGCGGG CCGCCCGCGG GGGGATCGGG CTCGGGTAGA 
    GGCGGGCGAC CTGGCGGGGG AAGTAAGGGG TCGCGCGTGG CGGGGAGATG 
    ATCTACACGG CGATAGACAC GTTCTACCTG ACGGACGAGC AGCTGCGGGA 
    CTCGCCGTCG AGGAAGGATG GGATCGACGA GGCCACCGAG ACCGCCCTCC 
    GCGTCTACGG CTGCGACCTC ATCCAGGAGA GCGGCATCCT CCTCAAGCTA 
    CCACAAGCAG TGATGGCCAC AGCACAAGTA TTGTTTCATC GTTTTTACTG 
    CAAGAAATCA TTTGTTCGGT TTAGCGTTAA GAGAGTTGCT GCAAGCTGTG 
    TTTGGCTGGC AGGGAAGTTG GAGGAGAGTC CAAGGAGATC AAAGCATATA 
    ATCATTGTCT TCCATAGAAT GGAATGTAGG AGAGAGAACG TACCAATAGA 
    ACACTTAGAT GTGTTTTCAA AGAAATACTC AGACTTGAAG CATGATCTGG 
    TAAGGACAGA ACGCCATCTG CTGAAAGAGA TGGGGTTTAT TTGCCATGTA 
    GAGCATCCTC ATAAGTTCAT ATCTAACTAC CTTGCAACAC TTGAAGCCCC 
    CGAACTGACG CAAGAGGCAT GGAACCTTGC CAACGATAGC TTGCGGACAA 
    CTCTATGTGT AAGATTCAAG AGTGAAGTTG TAGCATGTGG AGTTGTGTAT 
    GCTGCAGCAA GGAGGCATGG CGTGCCCCTC CCTGAAGATC CTCCCTGGTG 
    GAATGTGTTT GATGCTGATG AGGCAGGAAT TCAGGAAGTT TGCAGAGTTC 
    TTGCTCATCT CTACAGCCTC CCCAAGTCAC AATATATACA AGTGTATAAG 
    GACAATGATT CCTTCACGCA TAGGAGGACT TCTGATACAA ATGCTTCAAA 
    GGAAAGTCCT GCAACGACTG TTGCAAGCGA TAAGGGTACC CCTGTACCGT 
    CAAGTTCTAG CCAGGAAAAG GATGCACTGA TTAAGGCAGG GTCAGATAAG 
    GTGAAAGAAA AAGGTGACGA TGATGGGAAG ACGTTACCTT CTGAACCCAA 
    TGGTAAAGAA GGCCCTGCAG TGAATTTGAA TAGTGAGAAG TCAGAATCCA 
    ATGTTGATCG CTCTCGGGAA AGAGAAAGAG ATAGATCAAG AGGGCGGGAC 
    CGTGATAGCA GGGGCCGGGA CTCTGATCGT GATAGCAAGG GCAGGGACTC 
    CGATCGGGAG AGGGAGCGTG ATAGAGAAGC AGACAGGGAT AGGCAGCAGA 
    GACACCATTC TAAGGACAGA AGTTCAGGAT ACTCTGACAA AGAGAAGTCA 
    AGGCACCGCT CATCAAGAGA TCGTGGTGAT CACTACAGTT CGCACTCATC 
    TCGTGACAAA GATCGGCACA GGCGGCAGTA ATCTAGCAGA GCTCGAAAAC 
    ATGTAAACTG ATGAAGTACA CGTTGCACTA TCGTGGTAAA ATTGCCATTG 
    CAACTGGGTT CCGGGGTGTT TGTTATGATT GTTAAACTCT TTTTTTATTT 
    GCAACAGAAA AAGAATTCTT CTTTTGTGGT GAGTATCAGA CTTCATAGAC 
    TTAGCTTTGT ATGACGCGTG GGTCTGGGCA TGAATCACTT GTTATGGGAG 
    AAACTTATTC TTGCTATGCA AATCTATATA TCAGTTGATT CT

    Gene models with high sequence identity

    1. AT2G26430.1 [+] show detail - arginine-rich cyclin 1
      E-value: 6e-121; Score: 431.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYCLIN T,K-RELATED 1e-107
    HMMPanther Transcription regulator cyclin 1e-107
    superfamily Cyclin-like 5.2e-31
    superfamily Cyclin-like 2.3e-14
    HMMPIR Cyclin L 2.3e-231
    HMMSmart Cyclin 2.2e-11
    HMMSmart Cyclin 0.00015
    HMMPfam Cyclin, N-terminal 4.4e-14
    Gene3D Cyclin-related 1.2e-31

    See the detailed result >

    AT2G26430.1

    Model type
    Protein coding
    Short Description
    arginine-rich cyclin 1
    Curator Summary
    Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.
    Computational Description
    arginine-rich cyclin 1 (RCY1); CONTAINS InterPro DOMAIN/s: Cyclin L (InterPro:IPR017060), Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 14137 Blast hits to 8002 proteins in 370 species: Archae - 18; Bacteria - 504; Metazoa - 7867; Fungi - 2024; Plants - 1419; Viruses - 16; Other Eukaryotes - 2289 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR