K30820

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30820

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30820

Determination of introduced cDNA(s)

J023081J06 - Rice Full-length cDNAs - Original: J023081J06

full reading [+] show sequence

GAAGAGAGAA AAAAAAGAGA GAATAATTTC CCCCTTTTCT CTCTTCCGTG 
CCGGAGAATC GATGGAGATT AGGGCGCCGC CGACGAGCCT GAGGCTCGCG 
CCGCCGCCGC CGGCCTCCGC CAGCTTCCGC CGGACCGCGC TCAGGACCTC 
CTTCCTCAAC GGCAGCGTTT CACTTAGACT TATTCAAGTG CGCCAATCAA 
ATGTCAACAG GTTTAAGTGC AATGGCATAA GAAGTAACCT CCTTGATAGA 
TTTTCTAGGG TTGTAAAGTC CTATGCAAAT GCAGTCTTAA GTTCATTTGA 
AGACCCTGAA AAGATCCTAG ACCAGGCTGT TTTGGAAATG AATGACGATT 
TGACAAAGAT GCGGCAAGCC ACTGCACAGG TCTTGGCTTC TCAAAAGCGG 
CTTGAGAACA AATACAAAGC CGCTGAACAA GCTTCTGATG ATTGGTATCG 
GAGGGCTCAA CTTGCTCTTC AGAAGGGTGA TGAGGATCTT GCTCGTGAAG 
CCCTTAAGCG GCGTAAATCA TATGCTGACA ATGCAAGCTC CTTAAAGGCC 
CAGCTTGATC AGCAAAAGGG CGTGGTTGAG AACCTGGTAT CAAATACTCG 
GGTTCTTGAA AGCAAGATAG CAGAGGCTAA GCAAAAAAAA GATACCTTAA 
AAGCCCGTGC TCAATCAGCC AAGACTTCAA CAAAAGTGAG CGAAATGCTG 
GGGAATGTAA ATACTAGTGG TGCTCTTTCA GCATTTGAGA AAATGGAGGA 
AAAAGTTATG GCAATGGAGT CCCAAGCAGA GGCACTCGGT CAGTTGGCAA 
CTGATGATCT TGAAGGAAAG TTTGCATTGC TTGAGACTTC ATCGGTTGAT 
GATGACCTTG CACAAATGAA AAAGGAAATT TCTGGAAGCT CTTCGAAAGG 
AGAACTTCCT CCAGGTAGAA CGGCAGTCAG CAATTCAGGA GCAGCGCGCC 
CTTTCCGAGA CATCGAGATT GAGAATGAGC TAAATGAGCT GCGGAGGAAG 
GCCAATGAAT ATTAGATTAT GCAGTTTCCT TGTCCCTGCA CCAGGCCTGA 
CGAATCCTTT AGACTGAAGA ACCCCGGGAA GATATAGGAT GGTCTTCAGG 
TTTCTCCAAT GCCCCTTTGT TGAACCACCA GTGCAGCCTT TTTTCCCCCC 
AAGAGTATAA TGGATGCGTA AAAAAAATTC TACATTTTGC AGTGTGATTG 
ACATTGACTG TACAGTTAGC TACATAGTTA TGTAAAAGTC ATATTGCTCT 
TTCTAGAGCT GACTCTGCAT ATTTTAGTGG AAAGCCAAAA ATTTCCGTCC 
TCGTGC

Gene models with high sequence identity

AT1G65260.1 [+] show detail - plastid transcriptionally active 4
E-value: 4e-110; Score: 395.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	PspA/IM30	4.5e-55

See the detailed result >

AT1G65260.1

Model type: Protein coding
Short Description: plastid transcriptionally active 4
Curator Summary: Encodes a protein required for thylakoid membrane formation.
Computational Description: plastid transcriptionally active 4 (PTAC4); INVOLVED IN: vesicle organization, thylakoid membrane organization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 3123 Blast hits to 3108 proteins in 1139 species: Archae - 38; Bacteria - 2412; Metazoa - 160; Fungi - 68; Plants - 89; Viruses - 95; Other Eukaryotes - 261 (source: NCBI BLink).
Link: InterPro Scan - TAIR