K30823

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30823

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30823

Determination of introduced cDNA(s)

  • J033020C08 - Rice Full-length cDNAs - Original: J033020C08

    full reading [+] show sequence

    Nucleotide sequence: J033020C08 - full reading 
    GTGGGGAGAG CAAAGGCTCC GTGCCAACGT GCCCGCGGGG AAATGCCTCA 
    GCCCTCAGCC ATAGACCTTA CCTCATGGCC GTCGTAGCCC CTCCTTCCCT 
    TGCCCTTCCC CAACCTCCTC AGAACCCAAC CCCTAAACCT CGCCGCTGCG 
    CTCTCCGCCA TGCTCTCCTC CCCCGCGGCG CCCGTCCCCA ACGACGTCAC 
    CCTTCTCACC GTCCTCTCCG CCTGCGCCGA CTCCCCGTCC TCCCCGCTCG 
    CCCGCCGCCT CGCGCTCTCC GTCCACGCCC GCGTGCTCAA GCTCTTCCCC 
    TCCCACCTCC TCCTCTCCAC CTGCCTCGTG CGCTTCTACT TCGCGTCCCG 
    CTTGCCCCAC CTCGCCCTCC AGCTGTTCGA CGCCATGCCC GTGAGGTCCG 
    CCGTCACCTA CAACACGGTG ATCTCCGGCC TCATGCGGAA CGGCCTCGTC 
    GCCGCCGCGT TCGAGGTGTT CGACGGAATG CCGGCGCCGG ATAAGGTCTC 
    CTGGACGGCT CTCATCGACG GGTGCGTCAA GAACGGGCGC CACGACGAGG 
    CCATCGACTG CTTCCGCGCC ATGCTTCTGG ACGGTGTCGA GCCGGACTAC 
    GTCACGCTGA TAGCCGTCAT CTCCGCGTGC GCCGAGGTCG GCGCGCTGGG 
    GCTCGGGATG TGGGTGCACC GGCTCGTGGT CCGGCAGGGG CTGGAGCGCA 
    ACGTCAGGAT AGCCAACTCG CTCATCGACA TGTACGCGCG GTGCGGGCAG 
    GTGGAGCTCG CGCGGCAGGT GTTCAGCGGA ATGAGGAAGC GGACGGTGGT 
    CTCCTGGAAC TCGATGATCG TTGGGTTCGC CGCCAACGGC CGGTGCGCGG 
    ACGCCGTCGA GCACTTCGAG GCGATGCGGA GGGAGGGGTT CAAGCCGGAC 
    GCCGTGACGT TCACCGGCGT GCTCACGGCG TGCAGCCACG GCGGCCTCAC 
    CGACGAGGGG CTAAGATACT ACGACCTGAT GAGGGCGGAG TACGGCATCG 
    CGGCGCGGAT GGAGCACTAC GGCTGCGTGG TCGACCTGCT CGGCCGGTCG 
    GGGCAGCTCG AGGAGGCGAT GCGGGTGGTG ACCACCATGC CGATGCGGCC 
    AAACGAGGTG GTGCTCGGCG CCCTCCTCGC CGGCTGCCGG ATGCACGGGG 
    ACGTCGGCAT GGCCGAGCAG CTGATGCAGC ACCTGCTCGA GCTGGACACC 
    GGCGGCGACG CCAACTACGT GCTGCTGTCG AACATCTACG CCGCCGTCGG 
    CAAGTGGGAC GGCGCCGGGA AGGTCCGGAG CCTGATGAAG GCGCGGGGGC 
    TGAGGAAGAG GCCGGGCTAC AGCGCCGTGG AGATCGACGG CGACGTGCAC 
    GAGTTCGTCT CCGGCGATCG GTCGCATCCA CAGGCGGAGG AGATATCTCA 
    GATGCTTGGG TTGCTCATGC ATGAGATGGC AGGGCATGAT TATGACCATG 
    TAATCGATTG CTTGGATGGG GGATGAATTC AGACCCTGGA GACTGGAGAA 
    TGCAGAAGAC TGATATTCTG AAGTCAAAAG ATAGCCGACG TTAGATTAGA 
    GAACTGTTGT ATATCAGTAG TTCAGTACAT TTAGCTGTCC TGCCACTATG 
    ATTCCCCCTC ATCTGTGTAG TCACAGGAGT GAAGTCCAAC ATGAATTGAA 
    TTATCGC

    Gene models with high sequence identity

    1. AT1G05750.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 6e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pentatricopeptide repeat 0.00032
    HMMTigr Pentatricopeptide repeat 5.5e-10
    HMMTigr Pentatricopeptide repeat 0.098
    HMMTigr Pentatricopeptide repeat 4.9e-07
    HMMTigr Pentatricopeptide repeat 0.061
    HMMTigr Pentatricopeptide repeat 0.13
    HMMTigr Pentatricopeptide repeat 0.33
    ProfileScan Pentatricopeptide repeat 12.759
    ProfileScan Pentatricopeptide repeat 9.043
    ProfileScan Pentatricopeptide repeat 6.884
    ProfileScan Pentatricopeptide repeat 11.948
    ProfileScan Pentatricopeptide repeat 9.383
    ProfileScan Pentatricopeptide repeat 8.013
    ProfileScan Pentatricopeptide repeat 7.015
    ProfileScan Pentatricopeptide repeat 6.774
    HMMPfam Pentatricopeptide repeat 7.7e-06
    HMMPfam Pentatricopeptide repeat 1.7e-08
    HMMPfam Pentatricopeptide repeat 0.00015
    HMMPfam Pentatricopeptide repeat 2.1e-06
    HMMPfam Pentatricopeptide repeat 0.045
    HMMPfam Pentatricopeptide repeat 0.22
    HMMPanther SELENIUM-BINDING PROTEIN 2.9e-177
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.9e-177
    superfamily TPR-like 1.7e-32

    See the detailed result >

    AT1G05750.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Curator Summary
    Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.
    Computational Description
    pigment defective 247 (PDE247); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 41993 Blast hits to 13871 proteins in 254 species: Archae - 1; Bacteria - 18; Metazoa - 75; Fungi - 77; Plants - 41230; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR