K30825

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30825

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30825

Determination of introduced cDNA(s)

  • J023013B17 - Rice Full-length cDNAs - Original: J023013B17

    full reading [+] show sequence

    Nucleotide sequence: J023013B17 - full reading
    GGTCGTCCGT CCCCAGTTCG TCACCCTTCA TCTCCACAGC GCCAGACAAT 
    GGCGCCAAGA CAGCGGCTGT CATTCCGCCG CCTCGTCCTC CTCCTCGTCG
    CCTCCACCGC CCTCGCGTGC TCGGTGCTCG CGGGCGGCGC CGTGGCGAGC
    GTGGTCGAGA CGCTCGGCGT CCGGCGTCAC TTCGGCAGCC CGAAGCGCAA
    CACCACGGGG CAGCACGGGG CCGGCCGGCG CCGCGGCGGC GGCTCCGCCC
    GGAGCGGTCT GGCGTCGTGC AACATGTTCC AGGGAAGCTG GGTGTACGAC
    GACTCGCTGC CGATGTACGA CACGGCGGGC TGCCCCTTCG TGGAGGCGGA
    GTTCGACTGC CAGAAGTACG GCCGCCCCGA CAAGCTCTAC CTCAAGTACC
    GGTGGCGTCC CAGCTCGTGC GAGCTCCCGA GGTTCAACGG GCTGGATTTC
    CTCAGCAAAT GGAGGGGGAA GAAGATACTG TTCGTGGGGG ATTCCATCAG
    CCTGAACCAG TGGGAGTCGC TGGCGTGCAT GCTGCACGCG GCCGCGCCGT
    CCTCCAGGAC CACCTACAGC AGGGGCACCC CGTTCTCCAC CGTCACGTTC
    CAGGACTACG GGGTGTCGGT GGCGTACTAC CGGAGCACCT ACCTGGTGGA
    CATCGTCGAC GAGTCCATCG GCCGCGTGCT GAAGCTCGAC TCCATCTCCG
    GCGACGCGTG GCTCGGCGCC GACATGCTCA TCTTCAACAC CTGGCACTGG
    TGGACCCACA CCGGCAGAGA CCAGCCATGG GACTTTGTGC AAGATGGAGG
    CCAGGTGATG AAGGACATGG ACCGGCTCTC GGCCTTCTCC AAGGGGATGT
    CTACATGGGC CAGATGGGTC GATTCGAACG TGGACACATC CAAGACCAGG
    GTCTACTTCC AGGGCATCTC TCCAACCCAC TACAACGGAG CGGACTGGGG
    GGAGGGGTCG AGGAGCTGCG CGCAGCAGAC GCAGCCGGTG GCGGGGTCGG
    CGTACCCGGC GGGGCCGGTG CCGGCGCAGA GCGCGGTGAG GAGCGCGATC
    GCCGGCATGT CGAAGCCGGT GTTCCTGCTC GACATCACGC TGCTGTCGCA
    GCTGAGGAGG GACGGGCACC CGTCGGGGTA CAGCGGCGGC CACCCGGGCA
    ACGACTGCAG CCACTGGTGC CTCGCCGGCG TGCCGGACGC ATGGAACCAG
    ATCCTGTACG CCTCGCTCCT TGCATAGAGG GAAAGAATTG GAAGGGGATA
    TATCTCTCAA TCCGATTGGC CGTTCTCTCA TAATTTGTTG GTTGATTGTA
    TGGAGAGTAT TTCAATTGGT GGTTCCATAA TTGGTTAACT GATATATATG
    GATAGTCCAT CAGAGGATAC TACATTTTCC TTCTTGTTGG AGAAGTTGGG
    GATAATGCCA GGGTAGACAG CGAGGATCAA CTGGATACAA CTCCTTCAAA
    AGACAACAGA TGGTTGTTCG GATGTGGATG GAAAATTGGA AACAACTAGT
    AGTGTAGTAC TATTTCTAAT CCAATACGCT TAATAAAGAT ATACCAAGCA
    GGCAAGC

    Gene models with high sequence identity

    1. AT1G29050.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
      E-value: 1e-119; Score: 427.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G29050.1

    Model type
    Protein coding
    Short Description
    TRICHOME BIREFRINGENCE-LIKE 38
    Curator Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    TRICHOME BIREFRINGENCE-LIKE 38 (TBL38); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 37 (TAIR:AT2G34070.1); Has 1347 Blast hits to 1329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR