K30828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30828

Determination of introduced cDNA(s)

  • J023137P20 - Rice Full-length cDNAs - Original: J023137P20

    full reading [+] show sequence

    Nucleotide sequence: J023137P20 - full reading
    GACCTCGCAA ATCACAAGCA ACATCACCAC AGATCGATCG AGACAGCTAC 
    TGACATCAAC GTGAAAAAGG GAAGAAGAAC TAACCATGTC CATGCAGGAG
    ATGCTCCGCA TTGGAGACGA CGACGGCCGG AGCGATGCTC TGGAACGCGA
    GCTCAAGGAG AAGCTGAGGT TGCGCGGCGA TGCCTCACCG GCGAAATGCA
    CCAGGCAGGA GCAGCGGTGG CGGTCTGATC ATGGCATCGT CGACGCCCGC
    GAGAGGTTCG TGCAGGCGTA CGGCCGCCTC AGGGACGATC TCGTCGGCGA
    CGACTCGTGC GAGCTCACCG ACGAAGCCAG GCGCTGGCTT GCTCAGATGA
    TCGACTACAA TGTACCTGGA GGAAAGTTGA ACCGAGGGCT GTCAGTGATA
    GACAGTTACC TGCTGTTGAA ACAAGGAAGT GAGGTTACTG AAGATGACTT
    CTTCCTTGCT TGTGTGCTTG GTTGGTGTGT AGAATGGTTT CAAGCATGTG
    CACTACTACT TGATGACATC ATGGACGATT CACATACCAG GAGAGATCAG
    ATTTGCTGGT ACCGGCGACC TGAGGTTGGC CTCAGGGGTA TAAACGATGG
    TATCATACTA AAATGTCACA TCTTGATAAT GATAAAAAAG TATTTCAGAG
    AAAAGCCTTA CTTTCTTGAT ATCTTAGAAA TATGGAGCGA GATAGCTCTG
    CAGACTTCTC TGGGGCAGAT GCTTGATCTT ATTAGCACAC ATACTGGAGC
    AGATGATCTT GCAAAATACA GTATTGAAGG CTACCGTCGC ATTGTTAAGT
    ACAAGACAGC GTACTACTCC TTTTACCTTC CTGTGGCCAA TGCTTTGCTC
    TTATCTGGCG CAAAACTTGA AGACTTCAGT GGTCTAAAGG ATATACTTAT
    TGAAATGGGC ATATATTTTC AGATACAGGA TGACTACTTG GACTGTTTTG
    CTGACCCTAA CACCATAGGC AAGATTGGAA CTGACATCGA AGATCATAAG
    TGTTCCTGGT TAATAGTACA GGCTCTTGGT CATGCTGACA ACAATCAAAT
    AGAAGTACTA CATAGGAACT ATGGCAAGAA GGATTCAAGT TCTGTTTCCG
    AAGTAAAGAG GACTTACGCG GCGCTTGATT TGAAAGATAT CTTCTCCGAG
    TTCGAACGTC GATGCTACAA CCACCTGGTC ACCTCTATCG AAGCTCAGAA
    GGATCATGCA GCACGGGAGA TCCTGATATC ATTTCTGAAG AAAATTCATC
    AAAGGAAGAA GTAGTTAATA AGTTATAACA ATTATGACCT GTATGAGCTT
    ATGGTAACAT TTAAAAATGA TCGAAATCTA TCTCCCCATA AGTTATAATA
    ACACTATCTC CGGTTTC

    Gene models with high sequence identity

    1. AT5G47770.1 [+] show detail - farnesyl diphosphate synthase 1
      E-value: 2e-115; Score: 413.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Polyprenyl synthetase 3.9e-67
    HMMPanther FARNESYL-PYROPHOSPHATE SYNTHETASE 1.1e-136
    superfamily Terpenoid synthase 2.8e-93
    PatternScan Polyprenyl synthetase 0
    Gene3D Terpenoid synthase 5.5e-94

    See the detailed result >

    AT5G47770.1

    Model type
    Protein coding
    Short Description
    farnesyl diphosphate synthase 1
    Curator Summary
    Encodes a protein with farnesyl diphosphate synthase activity.
    Computational Description
    farnesyl diphosphate synthase 1 (FPS1); FUNCTIONS IN: dimethylallyltranstransferase activity, geranyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process, isoprenoid biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: farnesyl diphosphate synthase 2 (TAIR:AT4G17190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR