K30836

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30836

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30836

Determination of introduced cDNA(s)

  • J023078O09 - Rice Full-length cDNAs - Original: J023078O09

    full reading [+] show sequence

    Nucleotide sequence: J023078O09 - full reading 
    GAGGTCAGGG GCGCTAGCTG GCCACTGGCG ACTCACACAG TCACACACAC 
    ACACACTCTC TCGTCCTTGC TGCTAGCTAT CTATCGCTGC TTGCCCCGGC 
    CCATGCATGT GAGCTCACTT ATTATAGATC GACAACATCT GCGGCCTCGC 
    GTTCGGCAAG GACCCCGAGA CGCTCGCCCG CGGCCTGCCG GAGAACGACT 
    TCGCCTCGGC GTTCGACCGC GCCACCGAGG CCACTCTCAA CCGCTTCATC 
    TTCCCGGAGT GCGTGTGGCG GTTCAAGAAG TGGATGGGGC TCGGCATGGA 
    GACCACGCTT GCGCGCAGCG TCCAGCACGT CGACCGCTAC CTCTCGGCGG 
    TCATCAAGGC GCGCAAGCTC GAGCTCGCCG CCGGCAACGG CAAGGGCGAC 
    GCGTCGTCGG CCACGCCGCA CGACGACCTC CTGTCGCGCT TCATGCGGAA 
    GGGGACCTAC TCCGACGAGT CGCTGCAGCA CGTGGCGCTC AACTTCATCC 
    TCGCCGGCCG CGACACCTCC TCGGTGGCGC TCTCCTGGTT CTTCTGGCTG 
    GTCTCCACCC ACCCCGCCGT CGAGCGCAAG ATCGTCCGCG AGCTCTGCAC 
    CGTCCTGGCC GCGTCGCGCG GCGCCGACGA CCCGGCATTG TGGCTCGCCG 
    CGCCGCTCAA CTTCGAGGAG CTCGACCAGC TCGTCTACCT CAAAGCGGCG 
    CTCTCGGAGA CCCTCCGCCT GTACCCCTCC GTGCCGGAGG ACTCCAAGCA 
    CGTCGTCGCC GACGACGTCC TCCCCGACGG CACGTTCGTG CCGGCGGGGT 
    CGTCGGTCAC GTACTCCATC TACTCCGCGG GGCGCATGAA GACGGTGTGG 
    GGCGACGACT GCCTGGAGTT CCGGCCGGAG CGGTGGCTGT CGGCCGACGG 
    CACGAAGTTC GAGCCGCACG ACTCGTTCAG GTTCGTGGCG TTCAACGCCG 
    GGCCACGCAT TTGCCTCGGG AAGGACCTCG CGTACCTGCA GATGAGGAAC 
    ATCGCCGGCA GCGTGCTCCT CCGCCACCGC CTGGCCGTGG CGCCGGGCCA 
    CCGCGTCGAG CAGAAGATGT CGCTCACGCT GTTCATGAAG CACGGGCTCC 
    GGATGGAGGT GCGCCCGCGC GACCTCGCCC CGATCGTCGA CGAGCTCCGC 
    GGCGCCGGGG AGTACGCCGC CGCGGCGCGC GCCACCGCGG CCTGCGCTTA 
    GAAGATCCCG GGCGTTGGAC GAAGTCAATT GGAAATGGCA AAAAAATATG 
    TAGATAGATG AGAGTCCAAG ATAGTAATTA CTAAAGGGTT TGTATGGTTG 
    GTGAGGTCAT TTAAATCACT TGCTTTTACA GTTCATTACC AGTCGATAGA 
    GGAAATGTCT AAAGAAAACT CCAAACCTAA GATTCTTAGA TCATGTAGTA 
    CTATGATTTT GGTTGTGCAG CCACCAAAAT TAAGGAGCAA TAATTAATAA 
    TTAATCTCCT GTGTGTAACC C

    Gene models with high sequence identity

    1. AT4G00360.1 [+] show detail - cytochrome P450, family 86, subfamily A, polypeptide 2
      E-value: 6e-132; Score: 468.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome P450 5.6e-74
    HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 2e-147
    HMMPanther Cytochrome P450 2e-147
    FPrintScan Cytochrome P450, E-class, group I 1.7e-13
    FPrintScan Cytochrome P450, E-class, group I 1.7e-13
    FPrintScan Cytochrome P450, E-class, group I 1.7e-13
    FPrintScan Cytochrome P450, E-class, group I 1.7e-13
    FPrintScan Cytochrome P450, E-class, group I 1.7e-13
    FPrintScan Cytochrome P450, C-terminal 7.4e-12
    FPrintScan Cytochrome P450, C-terminal 7.4e-12
    FPrintScan Cytochrome P450, C-terminal 7.4e-12
    FPrintScan Cytochrome P450, C-terminal 7.4e-12
    Gene3D Cytochrome P450 1.4e-64
    HMMPfam Cytochrome P450 9.4e-52
    PatternScan Cytochrome P450, conserved site 0

    See the detailed result >

    AT4G00360.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 86, subfamily A, polypeptide 2
    Curator Summary
    Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.
    Computational Description
    "cytochrome P450, family 86, subfamily A, polypeptide 2" (CYP86A2); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily A, polypeptide 4 (TAIR:AT1G01600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR