K30837

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30837

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30837

Determination of introduced cDNA(s)

  • J023019E14 - Rice Full-length cDNAs - Original: J023019E14

    full reading [+] show sequence

    Nucleotide sequence: J023019E14 - full reading
    GTTCTGTGTT TGGCACGTCC ACGACAGCAC GAGACGGGTT GGGGACTTGG 
    GGGGTTGAAG AAGCCAAGCT CTCCTTGGTT GGCGCGCACG TACGTTCGCT
    TCGCTTCGAT TCGATGGCCA CTGGTGACCC AAACCCTACC ACCACTCCGC
    CGTCGCAGCA GCTGCAAGGA GCAGATCCCC AACCCCAATC CCAGCAGGAT
    GCCGCCGCCA ACGCCACTCC GGCGGCCGTG GCCGTGAGAG AGGATTATGT
    CCAGAACGCC GTCAAGTTCC TCTCCCACCC CAAGGTCAGG GGCTCCCCCG
    TCCTCTACCG CCGCTCCTTC CTAGAGAAGA AGGGCCTTAC CAAGGACGAG
    ATCGACGAGG CCTTCCGACG AGTCCCCGAT CCGCAACCCA GCGCTACTGC
    TACTGCTGCT GCTTCCCCTT CGCCTTCACA GCACCCCAAC AACCAGAACC
    ACTCTTCTAC CGTTGTGCAA CCTTATGCAC CAAGGCAACC AGCAACACCT
    GCTGGCTCTA TTATTGTTGC CACACAGCCC AAGTTCAGCT GGTACCGTGC
    ATTCGTCGCT GCAGGGCTAT TGCTTGGTTT TGGAGTTAGT GCTGCTGTGT
    TTGTCAAGAA ATTGCTCCTT CCTAGGCTTA AGTCTTGGAT CCGCAAGGTC
    GTAGCTGAAG GTGATGAAAA CGAGGGCAGG CAAATTAAGT CCAAGATCGA
    TGAGGAAACT GCTGAAGCTG TAAAAGCTTC TGCATCTGCT GTTTCTGCTA
    TTGCCAAAAC TAACCAAGAA TTGCTTGCTT CAAAGGATGA AGAAAAGAAG
    ATACTTGTGA CATTAACACA AGCACTAGAT TCCCAAGCAA AAGAATTGAA
    ATCCTTATGT GAGTCTCTGA ACCGTAGCAG GGATTCTATA AATATTACCA
    GGGAAGATAG GTTTTCTCAG TACCGGGCAT TGGAAGAGCA TGCCCCTTCT
    GCTGCAAGGA ATGGGCCAGT TAACACTCCA TGGAGAGCCT CTCAGCAAAC
    TAATATGTAT GGTGTGCCAA ACAGTGATTT TGGCTCAGGG AGGCCTTCAT
    TTGCGTCAAC ACATAATGAA GCTACACCTG GATCATTTTC AAGATCGTAC
    GTTGAGACAT CTGCTGCACA CCGAGGGGAT AATAGGTCTT CAGGGAGTAA
    GCCATGGGAG ATGCAGCAAT ACTCACAGCA GAGGATTGGC TATGGATCCA
    ACAGCCAGTT GAGTGATGAC GGATGCCCTG AAACTCAGGA CAACTATGGC
    GGGGGACCTT CGTATTCGTA TCACCAGAAT CAGAATCAGA ACGGGAAGGC
    TCCGGCTCCG GATATTCAAG CAGAGGAGGC CAGGCCATCG GTATACATAA
    GTGGGGCTGA GGAAAGGTCG CCTCCGCCTC CGCCTCAGCG CCGCTGGGTT
    CCCCCGCAGC CTCCGGGCGT TGTGATGCCG GAAGCTGTGG CTGCCATCCG
    TCAACCAAAG TCCCTCGCAA AGCAACCGTC GAGCGAAGCT TCTCAAGAGG
    CAGCCGGCGA GACGCATGCC AACGGTGCTT CAAGTTCGTC GCCTCTTCCT
    GAAGAGGCGC TTGTTAATGG CAGTGCCGCC GGACGTAGTG AGATCGAAGA
    ACAAGCAGAA GCCATCTAGA AACAATTTGT TTTAAATTGG GACGAGATGA
    TGTTGAGAAG CTGGAATATG TATTTATTTT GGATCAGTAC GGGAACGCCT
    ACTGTGGTAA CAGAAGATCT CGATTTGTGG TCGAGTTTAT ACTACACTAC
    GTCAAATAAC AAGTGTTGCT ACTAGCTGTG ACTGTGAGTA ATACCGATAC
    ATTACATTAC ATTACATACA TACACGGTGA TTAAAACAAA CAAGCAGACA
    TTTTTACTTG GTTATGTTAT GACAGGCAGA GATGGCATAT GTTAAGGAAG
    G

    Gene models with high sequence identity

    1. AT5G62810.1 [+] show detail - peroxin 14
      E-value: 1e-37; Score: 155.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62810.1

    Model type
    Protein coding
    Short Description
    peroxin 14
    Curator Summary
    mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2)
    Computational Description
    peroxin 14 (PEX14); FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: peroxisome organization, protein targeting to peroxisome; LOCATED IN: cytosol, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisome membrane anchor protein Pex14p, N-terminal (InterPro:IPR006785); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G62800.1); Has 366 Blast hits to 354 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 149; Plants - 89; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR