K30850

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30850

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30850

Determination of introduced cDNA(s)

  • J013084K17 - Rice Full-length cDNAs - Original: J013084K17

    full reading [+] show sequence

    Nucleotide sequence: J013084K17 - full reading
    GAGGGAAAAC CTGATTGGGT GAAGGATCTG GATGCTGTGG GTGAGAACGG 
    CGAGGAAATC GAGAACCCCC TTATTTTGTT GAATGATCCA TCCTCCGTTG
    AGCCATTGGG GAACTGTGGG AAGAAGATCC TCTTGTGGTG GCTCCGTGTT
    GAAGCGCGAG CTGACAGCAA ATTTCCTCAG GGGTGGGTAA TTGAGCCACC
    TTTGGACATA GTTGTTCCCG CCAAGCGCAC CCCATGGCCT GAAACTACCG
    CTGAGCTTTC GGCTGAATTA GTAGATTCCA AACAAGATCA GGAGGGTAGG
    CGGTTGTCAA GAACCGACAG ATCATCTCGG TCCCGAAGCA CCACAAAGCG
    GAAGGAGAAC TGAAGCAAAA TAAACACATC TTGTAATGTA TATCTTACAT
    CTGCACAAAC TACAATAGGA ACCATGTCTG GTTAATCTGG TGGGTATTAT
    GTTTATTTTT TTTCCTGATG TTTTGCTAAT GTGGCAGCGC TTCATACTCG
    TATGTCTTCT GTAGAAGACT GTTTTTTTAT TGGTAGCTGT ATTATCTATG
    TTGTAATATA CAGTGCAATC TGAATCAAGG AAATGGAAGC TGGATCCTGG
    ATATC

    Gene models with high sequence identity

    1. AT5G67230.1 [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
      E-value: 2e-31; Score: 132.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther BETA-1,3-GLUCURONYLTRANSFERASE 4.7e-25
    HMMPanther Glycosyl transferase, family 43 4.7e-25
    HMMPfam Glycosyl transferase, family 43 0.0000031
    Gene3D no description 0.00000000061
    superfamily Nucleotide-diphospho-sugar transferases 0.00000000031

    See the detailed result >

    AT5G67230.1

    Model type
    Protein coding
    Short Description
    Nucleotide-diphospho-sugar transferases superfamily protein
    Curator Summary
    Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.
    Computational Description
    IRREGULAR XYLEM 14-LIKE (IRX14-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G36890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR