K30921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30921

Determination of introduced cDNA(s)

  • J013045G23 - Rice Full-length cDNAs - Original: J013045G23

    full reading [+] show sequence

    Nucleotide sequence: J013045G23 - full reading
    GAGTCCACTC CCTCTCTCGA AACGCATCTC GCCGGCCGGT GGCGGCGGCG 
    CGCGCAGCTC CGGCGACCTC CCGGACGGCC GCCGCCATGC TACTGCCGAG
    GCGTCTTCCT CTTCTTGCTG GTCTCCTGCG CTCGGCCTCC TCCGACGCCT
    CCTCCATTCC TCCAAACCGA AAGAATGTCT CAGGTAGAGA AGGGTTTCTA
    TGGAGTTCAT GTTATTTTCA CAGCACAAGG CATCAGACAT CCAGAGAAGG
    GGAGCAGATG GCTAAGTAGG AGCTGCTAGA CCCCCTTGCA CTGATTAAAG
    ATGAAGTATC TGAAATCTCA AATAGATTGC GCTCAATGGT GGTAGCTGAG
    GTACCGGAAC TGACGTTAGC AGCTGGGTAC TTCTTCAGAG CTGGAGCTGA
    AGGGAAAAGA ACTTGCCCCA CTCGCCTGGT CATTGATGTG TCAGGTTCTA
    CTATTGATGG CTTCATCTAT AAGCATGGAC ATGGCTGACC CAATTGTTGG
    TTCAAAGAAT GAGATTCGTG AGAGATATAT GCGTCTTGCT GAGATAACTG
    AACTGATTCA TGTAACAAGC CTTATCCATG ATGATGTCTT GGATGATGCT
    AATACCAGGC GTGGCATGGA CTCACTGAAC TGTGTTATGG GAAAGAAGCT
    TGCAGTGCTG GCTGGTGATT TTCTACTCTC CAAGGCATTT TCTACTGCTG
    CGGTGTCTCT TGACAATGCT GAGGTTATAT TGTTGCTAGC AACGGCTGTA
    AATAACCTTG TAACTGGTGA GTTTATGCAG ATGAGAATAA CTCCAATACA
    ACGTTGCAGA AGTCATATTA CAAGACAGCT GCATTGATTT CAAACAGTTG
    CAAAGCTGTT GCGGTTCTTG CTGGCCAAAC AGCTGAAGTT GCGACGCTTG
    CTTATCAGGT ATAGCTTATC AGTTGATCGA TGACATCCTC GATTTCACAG
    GGACATCAGC TTCACTAGGC AAAGGCTCCT TGTCTGATAT CCATCAAGGA
    ATTGTGACGG CTCCCATATT GTTTGCAATG GAAGAGTACC CGCAATTGCG
    CGTAATTGTA GAACAGGGTT TTGATGACCC CTCAAATGTA GACGCAGCCC
    TTGCATACCT TGCCAGAAGT AAGGGAATTG AGAGGACAAG GTTACTTGCT
    GCTGAACATG CCAAATTGGC AGCAGACGCA ATCGATGCTC TTCCTGAGAG
    CAAGGATGGA TCTGTGCTGA TCTCAAGACA GGCACTCAAA GATCTTACAG
    AAAAGCTCAT CAAGAGAACA AAGTGAAAAT ATATTTATAA TCGATGAGAA
    GTGCCATTGG GCAGCAGAAT CCTTAAAAGA TCTCATCATG TTCTTCTTTG
    TCAAATCATT ACAGCTGAAA CCTGCAAGCT AAGCTTTGGA TGCATGTTCT
    ACTTCTCCAA ATTTTAATGG GTCAGTTTTT TATGGGCTGA CTCCATCAGT
    TCTTTAGGTC TTTAATGGGC TGAATTCTTT CACACGCTAA ATTGATTTGC
    TTGTTCT

    Gene models with high sequence identity

    1. AT2G34630.2 [+] show detail - geranyl diphosphate synthase 1
      E-value: 3e-86; Score: 60.10

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Terpenoid synthase 1.4e-24
    superfamily Terpenoid synthase 3e-26
    PatternScan Polyprenyl synthetase 0
    Gene3D Terpenoid synthase 1.7e-20
    Gene3D Terpenoid synthase 5.3e-18
    HMMPanther GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5.4e-35
    HMMPanther Polyprenyl synthetase-related 5.4e-35
    HMMPanther GERANYLGERANYL PYROPHOSPHATE SYNTHASE 6.8e-54
    HMMPanther Polyprenyl synthetase-related 6.8e-54
    HMMPanther GERANYLGERANYL PYROPHOSPHATE SYNTHASE 0.000000000028
    HMMPanther Polyprenyl synthetase-related 0.000000000028
    HMMPfam Polyprenyl synthetase 1.4e-20
    HMMPfam Polyprenyl synthetase 0.0000000000048

    See the detailed result >

    AT2G34630.2

    Model type
    Protein coding
    Short Description
    geranyl diphosphate synthase 1
    Curator Summary
    Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.
    Computational Description
    geranyl diphosphate synthase 1 (GPS1); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR