K30921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30921

Determination of introduced cDNA(s)

  • J013045G23 - Rice Full-length cDNAs - Original: J013045G23

    full reading [+] show sequence

    Nucleotide sequence: J013045G23 - full reading 
    GAGTCCACTC CCTCTCTCGA AACGCATCTC GCCGGCCGGT GGCGGCGGCG 
    CGCGCAGCTC CGGCGACCTC CCGGACGGCC GCCGCCATGC TACTGCCGAG 
    GCGTCTTCCT CTTCTTGCTG GTCTCCTGCG CTCGGCCTCC TCCGACGCCT 
    CCTCCATTCC TCCAAACCGA AAGAATGTCT CAGGTAGAGA AGGGTTTCTA 
    TGGAGTTCAT GTTATTTTCA CAGCACAAGG CATCAGACAT CCAGAGAAGG 
    GGAGCAGATG GCTAAGTAGG AGCTGCTAGA CCCCCTTGCA CTGATTAAAG 
    ATGAAGTATC TGAAATCTCA AATAGATTGC GCTCAATGGT GGTAGCTGAG 
    GTACCGGAAC TGACGTTAGC AGCTGGGTAC TTCTTCAGAG CTGGAGCTGA 
    AGGGAAAAGA ACTTGCCCCA CTCGCCTGGT CATTGATGTG TCAGGTTCTA 
    CTATTGATGG CTTCATCTAT AAGCATGGAC ATGGCTGACC CAATTGTTGG 
    TTCAAAGAAT GAGATTCGTG AGAGATATAT GCGTCTTGCT GAGATAACTG 
    AACTGATTCA TGTAACAAGC CTTATCCATG ATGATGTCTT GGATGATGCT 
    AATACCAGGC GTGGCATGGA CTCACTGAAC TGTGTTATGG GAAAGAAGCT 
    TGCAGTGCTG GCTGGTGATT TTCTACTCTC CAAGGCATTT TCTACTGCTG 
    CGGTGTCTCT TGACAATGCT GAGGTTATAT TGTTGCTAGC AACGGCTGTA 
    AATAACCTTG TAACTGGTGA GTTTATGCAG ATGAGAATAA CTCCAATACA 
    ACGTTGCAGA AGTCATATTA CAAGACAGCT GCATTGATTT CAAACAGTTG 
    CAAAGCTGTT GCGGTTCTTG CTGGCCAAAC AGCTGAAGTT GCGACGCTTG 
    CTTATCAGGT ATAGCTTATC AGTTGATCGA TGACATCCTC GATTTCACAG 
    GGACATCAGC TTCACTAGGC AAAGGCTCCT TGTCTGATAT CCATCAAGGA 
    ATTGTGACGG CTCCCATATT GTTTGCAATG GAAGAGTACC CGCAATTGCG 
    CGTAATTGTA GAACAGGGTT TTGATGACCC CTCAAATGTA GACGCAGCCC 
    TTGCATACCT TGCCAGAAGT AAGGGAATTG AGAGGACAAG GTTACTTGCT 
    GCTGAACATG CCAAATTGGC AGCAGACGCA ATCGATGCTC TTCCTGAGAG 
    CAAGGATGGA TCTGTGCTGA TCTCAAGACA GGCACTCAAA GATCTTACAG 
    AAAAGCTCAT CAAGAGAACA AAGTGAAAAT ATATTTATAA TCGATGAGAA 
    GTGCCATTGG GCAGCAGAAT CCTTAAAAGA TCTCATCATG TTCTTCTTTG 
    TCAAATCATT ACAGCTGAAA CCTGCAAGCT AAGCTTTGGA TGCATGTTCT 
    ACTTCTCCAA ATTTTAATGG GTCAGTTTTT TATGGGCTGA CTCCATCAGT 
    TCTTTAGGTC TTTAATGGGC TGAATTCTTT CACACGCTAA ATTGATTTGC 
    TTGTTCT

    Gene models with high sequence identity

    1. AT2G34630.2 [+] show detail - geranyl diphosphate synthase 1
      E-value: 3e-86; Score: 60.10

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Terpenoid synthase 1.4e-24
    superfamily Terpenoid synthase 3e-26
    PatternScan Polyprenyl synthetase 0
    Gene3D Terpenoid synthase 1.7e-20
    Gene3D Terpenoid synthase 5.3e-18
    HMMPanther GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5.4e-35
    HMMPanther Polyprenyl synthetase-related 5.4e-35
    HMMPanther GERANYLGERANYL PYROPHOSPHATE SYNTHASE 6.8e-54
    HMMPanther Polyprenyl synthetase-related 6.8e-54
    HMMPanther GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2.8e-11
    HMMPanther Polyprenyl synthetase-related 2.8e-11
    HMMPfam Polyprenyl synthetase 1.4e-20
    HMMPfam Polyprenyl synthetase 4.8e-12

    See the detailed result >

    AT2G34630.2

    Model type
    Protein coding
    Short Description
    geranyl diphosphate synthase 1
    Curator Summary
    Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.
    Computational Description
    geranyl diphosphate synthase 1 (GPS1); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR