K30946

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30946

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30946

Determination of introduced cDNA(s)

  • J013000P16 - Rice Full-length cDNAs - Original: J013000P16

    full reading [+] show sequence

    Nucleotide sequence: J013000P16 - full reading 
    GACATCGCGC ATCCACTCCA CACCACACGC TTCACTGGTT CCGAGCACTC 
    GCCACCGATA CACTCCAGTG GCAGCCGAGC TAGCCGAGAG CCAAGCAACT 
    TGCCGTGGCC AATAAGCTCC CGTGAGCTGA CGTCTCGTGC TCGACGGCTC 
    GGCGCTATAT ATAAAAGCGT AGTAAGCTGG TAAAAAATTC ACAAGGCCAC 
    GCGCATCTTG TCTCGGCCAA AAAAAAGAGA GCGCACACGC GGTTGATTTG 
    TTTGACCGAC GCGCGTAGGC GGAGGCGGCG AGCTAGCGGG GCCGGCGGGC 
    ATGTCGTGGT CCGAGACGGA CGCCGCGCTG TTCGCGGCGG TGCTGGGGCA 
    CGACGCGGCG CATCACCTGG CCACCACGCC GCCGCACCTC GACGCGCCGG 
    AGGGGTCGCC GTCGTCGGCC GAGCTGCAGG CGAGCCTGCA CGACCTCGTC 
    GAGCGGCAGG GAGGGGCCTG GACGTACGGC ATCTTCTGGC AGGAGTCCCG 
    CGGCGCCGGT GCCGCCAGCG GCCGCGCTGC CCGCGCCGTG CTCGGCTGGG 
    GCGACGGCCA CTGCCGCGAC GGTGCCGGAC ACGGGGAGGT CGGCGCCGCG 
    GAGAGGAGCG TGGCGCGGAA GCGCGTGCTG CTGCGGCTGC ACGCGCTGTA 
    CGGAGGCGGG GATGAGGATG GCGCCGACTA CGCGCTCCGG CTGGACCGGG 
    TCACCGGCGC CGAGATGTAC TTCCTGGCGT CCATGTACTT CTCCTTCCCG 
    GAGGGCTCGG GCGGACCGGG CCGCGCTCTG GCCTCCGGCC GCCACGCCTG 
    GGCGGACGTA GACCCCCACC CTTCCGGCTC CGGTAGCGCG CCAGGGTGGT 
    ACGTTCGCTC GTCTCTCGCC CAGTCCGCGG GGTTACGCAC CGTCGTCTTC 
    CTCCCGTGCA AGGGCGGCGT TCTCGAGCTC GGTTCCGTCG TAGCCATCCG 
    CGAGACCCCC GAGGTCTTGC GCGCCATCCA ATCTGCCATG CGCGCCGTGC 
    CAGCTCCGCC GGAAGATTTC ATGAGAATCT TCGGCAAGGA TCTCTCACCC 
    GGCCGACCGT CCCAGCCCAT GGGATGCGAC GCCCCATGGA CGCCGCGGCT 
    CGTTGTCCAA ACCACGCCGG TGCGCCCAGC CAAGAGCTTG GACTTCTCCA 
    AGGCGAACGT GCAGGAACAG GCCGGCGGCC AGGAGCGGCG GCCGCGGAAG 
    CGTGGGCGCA AGCCGGCGAA CGGGCGGGAG GAGCCGCTGA ACCACGTGGA 
    GGCGGAGCGG CAGCGGCGGG AGAAGCTGAA CCAGAGGTTC TACGCGCTGC 
    GCGCGGTGGT GCCCAAGATC TCCAAGATGG ACAAGGCGTC CCTGCTCAGC 
    GACGCCATCG CGTACATCCA GGAGCTGGAG GCCCGGCTCA GGGGCGACGC 
    GCCCGTGCCC GCGCGGGCGG ATGGGCCGGC CGTGGAGGTG AAGGCAATGC 
    AGGACGAGGT GGTGCTGCGC GTGACCACGC CCCTGGACGA GCACCCCATC 
    TCCAGGGTGT TCCACGCCAT GAGGGAATCC CAGATCAGCG TCGTGGCGTC 
    GGACGTGGCG GTGTCGGACG ACGCCGTCAC GCACACGCTC ATGGTGCGGT 
    CGGCCGGGCC GGAGCGGCTC ACGGCGGAGA CGGTGCTCGC GGCGATGTCG 
    CGGGGGGTGA GCGTCACCAC TCCCTCCCCG TGACAGTGCA GTGCAGTAAG 
    TTAGTACTGT ACTACCAGTA CAGCAGTACT CGTGCGTACG GTATAGCTGC 
    CAACTGTTAT CAGTCTTTGA ATCCTAGGTA GGTGCAACTC CTTGTGACTT 
    CAAGCAATTA ATGGAAGCAA AGATGATATT TATATATTTC TTTTCCTGAT 
    TTATATGTTA GATTTAGATC ATTGTCTTAA AAAAATGTTA GATTAAGATG 
    CATGTACACA AATTTAGCCT GAAGCATCGT ATAGGGGTTT TCCATACTTT 
    GATATGGCAA TGACATGTCC TCGTTGTTGG

    Gene models with high sequence identity

    1. AT2G46510.1 [+] show detail - ABA-inducible BHLH-type transcription factor
      E-value: 2e-65; Score: 247.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Helix-loop-helix DNA-binding 0.000000000000003
    HMMPanther CENTROMERE-BINDING PROTEIN 1, CBP-1 0.0000003
    HMMPanther STEROL REGULATORY ELEMENT-BINDING PROTEIN 0.0000003
    Gene3D Helix-loop-helix DNA-binding 0.00000004
    HMMPfam Helix-loop-helix DNA-binding domain 0.000000000055
    HMMSmart Helix-loop-helix DNA-binding domain 0.0000000000000011
    ProfileScan Helix-loop-helix DNA-binding domain 14.51

    See the detailed result >

    AT2G46510.1

    Model type
    Protein coding
    Short Description
    ABA-inducible BHLH-type transcription factor
    Curator Summary
    Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.
    Computational Description
    ABA-inducible BHLH-type transcription factor (AIB); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G01260.3); Has 3953 Blast hits to 3634 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 110; Plants - 3759; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR