K30950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30950

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30950

Determination of introduced cDNA(s)

  • J013154E21 - Rice Full-length cDNAs - Original: J013154E21

    full reading [+] show sequence

    Nucleotide sequence: J013154E21 - full reading 
    GGTCGTCTCT CGCCCACTTC GTCGCTCGCT CGCTCATTAA TGGCGGCCAC 
    TGCATCGTTG GCGCCGTCCA TCTCCATTAA TGCCTCCATC CACCTCGCCC 
    ATCCCTACAC TCTACTACTC CTCCACTTAA CAAGATGAGC TGAGCGCCAG 
    CTTCTCGGCA CGGGCCGTTG CATCCTCTCC ATTCCATCCA CCACCCACCC 
    ACCCATCCAA CCTCCGCCCC CGGTATCCTT GAGCTGGAGG AGGTGGTGGT 
    GGTGGATCAC CTGTTCTTGG GATTCTGCTG CTGCGAGTGC GTGCATTGTG 
    GTGGGGGGTG TTTGGTTCTT GGTTGGTGAG CGGTGTTTGA AGCGGTTTCG 
    CGCGTGGTCG TTGGGTGATG CGAGAGCTGG GAAGCTGTGA AAGCCTCGCG 
    CTTAAGGTGC TCGATCAATT GCCGCTGAGA GCGCACGCCT CTGATTTCGC 
    TGCTGAATTA CGGCTGTTGG CGAGAGGAGA CAGATGGTCG GGAGCGTGCA 
    CGTGAATGGA TCGGTGAACG GCGGCAATGG CACCGAGGAG AGGCTCGACG 
    AGCTGCGCCG CCTGCTCGGC AAGTCCGACG GCGACTTGCT GAAGATCGTC 
    GGCATTGGCG CCGGCGCGTG GGGCAGCGTC TTCGCCGCCC TGCTGCAGGA 
    CGCCTACGGC CGTTTCCGGG AGAAGGTTCA GATACGGATA TGGCGCCGGG 
    CGGGGCGGTC GGTGGACCGG ACCACCGCGG AGCATCTGTT CGAGGTGATC 
    AACTCGAGGG AGGACGTGCT GAGGCGGCTC ATCCGCCGCT GCGCCTACCT 
    CAAGTACGTC GAGGCGCGCC TCGGCGACAG GACATTGTAC GCCGATGAGA 
    TACTGAGGGA CGGCTTCTGC CTGAACATGA TCGACACGCC ACTCTGCCCT 
    CTCAAGGTGG TCACCAACCT GCAGGAAGCT GTCTGGGATG CTGACATTGT 
    GGTGAACGGC CTTCCATCCA CCGAGACGAG GGAGGTGTTC GAGGAGATCA 
    GCAAGTACTG GAAGGAGCGG ATCAGCGTTC CGGTGATAAT CTCGCTCGCA 
    AAGGGGATAG AAGCATCCTT GGACCCAATT CCTCGTATCA TTACGCCCAC 
    GCAGATGATT AGTTCTGCAA CTGGAGTTCC AACTGAGAAT ATACTATATC 
    TTGGAGGCCC AAACATTGCC TCAGAGATTT ATAACAAAGA ATATGCAAAT 
    GCTCGAATCT GTGGGTCCAA CAAGTGGAGG AAACCTCTCG CTAAGTTTCT 
    GAGACAACCA CATTTCATTG TCTGGGATAA CAGTGATCTT GTTACACATG 
    AGGTGATGGG TGGTTTGAAG AATGTCTACG CCATCGGTGC TGGAATGGTT 
    GCAGCTTTAA CTAATGAGAG TGCAACAAGC AAGTCGGTGT ATTTTGCTCA 
    TTGCACGTCA GAGATGATAT TCATTACTCA TTTGCTCACA GAACAACCTG 
    AGAAACTTGC TGGCCCTCTG CTGGCTGATA CTTATGTTAC TCTCCTGAAA 
    GGTCGCAATG CGTGGTATGG GCAAATGCTA GCGAAGGGAG AACTGAGCCC 
    TGACATGGGC GACAGCATCA AGGGGAAGGG GATGATTCAG GGTATCTCTG 
    CTGTTGGTGC ATTTTTTGAG CTTCTCAGTC AACCCAGCTT AAGTGTGCAA 
    CACCCAGAGG AAAATAAGCA AGTTGCACCT GCTGAACTGT GCCCGATCTT 
    GAAGAGGCTC TATAGAATAC TAATAAAAAG GGAGCTCTCG ACAAGAGATA 
    TTCTGCAAGC CCTGAGAGAT GAAACCATGA ATGATCCTCG TGAAAGGATT 
    GAGATGGCGC AAAGCCATGC ATTCTACCGC CCATCTCTCC TAGGAAAACC 
    ATGACCTGTT CGTCCTGTAT ATGATTAGAA CATAAACAAG GTTGGATGAG 
    ACCTCTAGTT TGACATGCTT AGCATCATTC GTTATTAAGC CTGAAGAAGG 
    TGATTGTCGC TGGCCTATGT GTGAACTGTG AATCCCAATG GGGCTTATTT 
    TTCTGGAATT GTTAGTACTT TGATTATCAT GCCGTACAAC AGTACAAGAG 
    AGAGTGCACA GAGTCAATAA AGAATTTCCT

    Gene models with high sequence identity

    1. AT2G41540.3 [+] show detail - 6-phosphogluconate dehydrogenase family protein
      E-value: 0; Score: 752.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 2.10000037262654e-08
    HMMPfam NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal 2e-07
    superfamily NAD(P)-binding domain 6.6e-15
    HMMPanther NAD-dependent glycerol-3-phosphate dehydrogenase 6.80004680300071e-97
    Gene3D Dehydrogenase, multihelical 1e-15
    superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 1.8e-19
    FPrintScan NAD-dependent glycerol-3-phosphate dehydrogenase 5.09999882439977e-06
    FPrintScan NAD-dependent glycerol-3-phosphate dehydrogenase 5.09999882439977e-06
    HMMPfam NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal 1.6e-32

    See the detailed result >

    AT2G41540.3

    Model type
    Protein coding
    Short Description
    6-phosphogluconate dehydrogenase family protein
    Curator Summary
    Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.
    Computational Description
    GPDHC1; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT3G07690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR