K30950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30950

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30950

Determination of introduced cDNA(s)

  • J013154E21 - Rice Full-length cDNAs - Original: J013154E21

    full reading [+] show sequence

    Nucleotide sequence: J013154E21 - full reading
    GGTCGTCTCT CGCCCACTTC GTCGCTCGCT CGCTCATTAA TGGCGGCCAC 
    TGCATCGTTG GCGCCGTCCA TCTCCATTAA TGCCTCCATC CACCTCGCCC
    ATCCCTACAC TCTACTACTC CTCCACTTAA CAAGATGAGC TGAGCGCCAG
    CTTCTCGGCA CGGGCCGTTG CATCCTCTCC ATTCCATCCA CCACCCACCC
    ACCCATCCAA CCTCCGCCCC CGGTATCCTT GAGCTGGAGG AGGTGGTGGT
    GGTGGATCAC CTGTTCTTGG GATTCTGCTG CTGCGAGTGC GTGCATTGTG
    GTGGGGGGTG TTTGGTTCTT GGTTGGTGAG CGGTGTTTGA AGCGGTTTCG
    CGCGTGGTCG TTGGGTGATG CGAGAGCTGG GAAGCTGTGA AAGCCTCGCG
    CTTAAGGTGC TCGATCAATT GCCGCTGAGA GCGCACGCCT CTGATTTCGC
    TGCTGAATTA CGGCTGTTGG CGAGAGGAGA CAGATGGTCG GGAGCGTGCA
    CGTGAATGGA TCGGTGAACG GCGGCAATGG CACCGAGGAG AGGCTCGACG
    AGCTGCGCCG CCTGCTCGGC AAGTCCGACG GCGACTTGCT GAAGATCGTC
    GGCATTGGCG CCGGCGCGTG GGGCAGCGTC TTCGCCGCCC TGCTGCAGGA
    CGCCTACGGC CGTTTCCGGG AGAAGGTTCA GATACGGATA TGGCGCCGGG
    CGGGGCGGTC GGTGGACCGG ACCACCGCGG AGCATCTGTT CGAGGTGATC
    AACTCGAGGG AGGACGTGCT GAGGCGGCTC ATCCGCCGCT GCGCCTACCT
    CAAGTACGTC GAGGCGCGCC TCGGCGACAG GACATTGTAC GCCGATGAGA
    TACTGAGGGA CGGCTTCTGC CTGAACATGA TCGACACGCC ACTCTGCCCT
    CTCAAGGTGG TCACCAACCT GCAGGAAGCT GTCTGGGATG CTGACATTGT
    GGTGAACGGC CTTCCATCCA CCGAGACGAG GGAGGTGTTC GAGGAGATCA
    GCAAGTACTG GAAGGAGCGG ATCAGCGTTC CGGTGATAAT CTCGCTCGCA
    AAGGGGATAG AAGCATCCTT GGACCCAATT CCTCGTATCA TTACGCCCAC
    GCAGATGATT AGTTCTGCAA CTGGAGTTCC AACTGAGAAT ATACTATATC
    TTGGAGGCCC AAACATTGCC TCAGAGATTT ATAACAAAGA ATATGCAAAT
    GCTCGAATCT GTGGGTCCAA CAAGTGGAGG AAACCTCTCG CTAAGTTTCT
    GAGACAACCA CATTTCATTG TCTGGGATAA CAGTGATCTT GTTACACATG
    AGGTGATGGG TGGTTTGAAG AATGTCTACG CCATCGGTGC TGGAATGGTT
    GCAGCTTTAA CTAATGAGAG TGCAACAAGC AAGTCGGTGT ATTTTGCTCA
    TTGCACGTCA GAGATGATAT TCATTACTCA TTTGCTCACA GAACAACCTG
    AGAAACTTGC TGGCCCTCTG CTGGCTGATA CTTATGTTAC TCTCCTGAAA
    GGTCGCAATG CGTGGTATGG GCAAATGCTA GCGAAGGGAG AACTGAGCCC
    TGACATGGGC GACAGCATCA AGGGGAAGGG GATGATTCAG GGTATCTCTG
    CTGTTGGTGC ATTTTTTGAG CTTCTCAGTC AACCCAGCTT AAGTGTGCAA
    CACCCAGAGG AAAATAAGCA AGTTGCACCT GCTGAACTGT GCCCGATCTT
    GAAGAGGCTC TATAGAATAC TAATAAAAAG GGAGCTCTCG ACAAGAGATA
    TTCTGCAAGC CCTGAGAGAT GAAACCATGA ATGATCCTCG TGAAAGGATT
    GAGATGGCGC AAAGCCATGC ATTCTACCGC CCATCTCTCC TAGGAAAACC
    ATGACCTGTT CGTCCTGTAT ATGATTAGAA CATAAACAAG GTTGGATGAG
    ACCTCTAGTT TGACATGCTT AGCATCATTC GTTATTAAGC CTGAAGAAGG
    TGATTGTCGC TGGCCTATGT GTGAACTGTG AATCCCAATG GGGCTTATTT
    TTCTGGAATT GTTAGTACTT TGATTATCAT GCCGTACAAC AGTACAAGAG
    AGAGTGCACA GAGTCAATAA AGAATTTCCT

    Gene models with high sequence identity

    1. AT2G41540.3 [+] show detail - 6-phosphogluconate dehydrogenase family protein
      E-value: 0; Score: 752.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 2.10000037262654e-08
    HMMPfam NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal 2e-07
    superfamily NAD(P)-binding domain 6.6e-15
    HMMPanther NAD-dependent glycerol-3-phosphate dehydrogenase 6.80004680300071e-97
    Gene3D Dehydrogenase, multihelical 1e-15
    superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 1.8e-19
    FPrintScan NAD-dependent glycerol-3-phosphate dehydrogenase 5.09999882439977e-06
    FPrintScan NAD-dependent glycerol-3-phosphate dehydrogenase 5.09999882439977e-06
    HMMPfam NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal 1.6e-32

    See the detailed result >

    AT2G41540.3

    Model type
    Protein coding
    Short Description
    6-phosphogluconate dehydrogenase family protein
    Curator Summary
    Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.
    Computational Description
    GPDHC1; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT3G07690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR