K31001

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31001

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31001

Determination of introduced cDNA(s)

  • J023060N16 - Rice Full-length cDNAs - Original: J023060N16

    full reading [+] show sequence

    Nucleotide sequence: J023060N16 - full reading 
    GATGAGAGCA GAGAGCCAAA TTAAGATGGC TGCAGCGAGG AGACTGCCCG 
    TCCTGGAGCT GGTCTCCTTC GTCGCCGTCC TCCTTATCTC CTCACCAACA 
    GCAGCAGCAG CCGAGTTGTC TGTGGACTTC CACGCGGCGT CGTGCCCGCC 
    GCTGGAGGCC ATCGTGCGCT CCTCAGTGCA AGCCGCGCTG CAGCAAGAGA 
    TCGCCCTCGC CGCCGGCCTC CTCCGCATCT TCTTCCACGA CTGCCTCCCG 
    CAGGGGTGCG ATGCATCGGT GTATCTGAGG GGAGGCAGCA ACTCAGAGCA 
    GGGCATGGGC CCAAACCTGA CGCTGCAGCC GCGGGCGCTG CAGCTCGTCG 
    ACGACATCCG CGCCAAGGTG CATGCAGCAT GCGGCCCCAC CGTCTCCTGC 
    GCCGACATCT CCGCGCTCGC CACCCGTGAC GCCGTCGTCG TCTCCGGGGG 
    ACCCTCGTAC GCAGTGTCTC TCGGCCAAAA AGACAGCCTC GCCCCGGCCC 
    CGGTGCGCCT CGTCAACCAA CTCCCGGGCC CGGGCACCTC CAGCGTCCAG 
    GCTCTCCTCG ACAAATTCGG AAGCAAGGGC CTCAGAGAGG CCGCCGACCT 
    GGTGGCGCTT TCCGGCGCCC ACACCGTCGG GAGGGCGCAC TGCGACTTCT 
    TCCGTGACCG CGCCGCCCGC CAGGACGACA CCTTCTCCAA GAAGCTGGCC 
    GTGAACTGCA CCAAGGACCC CAACCGGCTG CAGAATCTGG ACGTCGTCAC 
    GCCCGACGCC TTCGACAACG CCTACTACGT CGCGCTCACC AGGAAGCAGG 
    GGGTGTTCAC CTCCGATATG GCGCTCATCA AGGACCGGAT CACGGCGCCA 
    ATCGTCAGGC AGCTCGCCGC GGACAAGGCC GCATTCTTCA GGCAGTTCGC 
    CAAGTCCATG GTCAAGCTCA GCCAGGTTCC GAGGACTGAC AGGAACGTCG 
    GCGAGATCCG CCGCAGCTGC TTCAGGACCA ACGGACCACG CCTCGTCGAC 
    TTGGCCACCG GCGATGAGGC CGCTTCTCCT TGATATGGGT GGATCGATCG 
    AGATCGTTGG CTCCGGCTGT ACGACGACAT GTCCACGGAG CGGCCCTCCA 
    TCCGTTGTTG ATTAATTAGG GAGGTGGTTG ACGTATATAC GCTAGCTGAT 
    CCTGGTCTCG TTGGCCTGCA CGAGTGCAGG CCTTGGCCCT TGGCTTTTGT 
    TCGCTTAATT CGTTGTGTCC CTACCATAAG GGAGATAGCA GTGCGACCAC 
    CGCATTTGCT GCGCTTCCGT TGCCACCTGG ACCAAGCTCC TCAAGGGATA 
    TATGCTTCAC AGTAGTGCAA GTTATTTATT GTGGATCTCA CTTGTAGATC 
    CACTCCCACT TTTCATCTCC CCCTATATCC TCTCTGCCTT TCCCACCGCC 
    GGAGGAAGAC GAGGCGCCGG GTGAAGGAAA CCGAGGTGAC GGCGCTTGGC 
    GGAGGAAGCT AAGGTATCGA GCGGAGACGG AGTCAGGCGG AGCGGCAGCA 
    GCAGCTCAAG AAGTAGTGGC GCCGGGTGGA GGGAGCCGAG CCGTCGGGCC 
    CATGCGGCGA CGACACTAGG CGGAGCGGCG GCTAGATCCA CCGGTGTACC 
    ACCCTTCCTC TCCTCCCCAA AAGCATCGGC GAGGTCGGCG GCACGGGTGT 
    GGATCTGGAG GTGACGAGGG CGTCCCAAGC GACGAAGGCA ACAGCTCGAC 
    GTCGGCGCCA CCTCACCTTC TCTCCTCTTG ACGCGACGCC GGCACAACTA 
    TATCAGGGGA TGAAGAGGAC AAGAACAACG GCAACGTTTA TCCCCTCTCC 
    CCACCTTTTT CACCCCTCCT TCGTCTGTGG CCACGGCGTT GTGTCGCCGG 
    TGCGGTCTGA AGCGCTCCTC ACCTCATCGC CCTCCTCCAC TGTCCAATAT 
    GCTCGGCAGC GTGGAGCGCG GGGATGGCGA CAAAGTGCCT CTCCTCGGTC 
    CTCTCTCTCC CTTCCTTATG GTGCGGGGCA TGAAATGTGG GATCCAAAGA 
    TGCAGATTTT GACGAGGTAC CTGTGGTAAC ATTTGGCTCC GCGTTCTTCA 
    GAGCAACAAA ATAGTTCGAC GTGTGGTGGA ATCTCCAACC TATTTGGCTC 
    GGGCTGAATG CCACGTCAAT GCACTATAAA AGCCAATAAT AAGATTGTTT 
    TTCTTTGCTA GCGGTACTAC CTCATAATTT CAATCTCGTA CTACCTCCGT 
    TTTCTAATAT ATAGCGATGT TAACTTTTTA CATAATGTTT AATCATTGTT 
    TTAGTT

    Gene models with high sequence identity

    1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
      E-value: 2e-53; Score: 207.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Plant peroxidase 1.1e-43
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.7e-30
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.7e-30
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.7e-30
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.7e-30
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.7e-30
    Gene3D no description 5.7e-43
    superfamily Haem peroxidase 1.1e-87
    HMMPfam Haem peroxidase, plant/fungal/bacterial 8.4e-63
    ProfileScan Haem peroxidase, plant/fungal/bacterial 59.427

    See the detailed result >

    AT1G71695.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR