K31004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31004

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31004

Determination of introduced cDNA(s)

  • J033076L21 - Rice Full-length cDNAs - Original: J033076L21

    full reading [+] show sequence

    Nucleotide sequence: J033076L21 - full reading
    GCTCGAAAAC CCTCGCGAAT CTGAGATCCC CAAGAATTCC TTCTCGAAAA 
    CCCTAGAGGA GAGCGAGAGA GAAGAGGAGG CGGCGGCGGC GGCGGCGGAA
    GCACATGGCG ATCATCTCCG ACTTCCAGGA GGAAGAGGCT CCGCCGCGGC
    AGCAGCAGCA ACCGGCTTCG GTGGCGGCGG CGGCGGGGAG CGGCGACGAG
    GTCCTCGCGG CGGAGCTGGA GCGGAGGGGC GGCGCGATCC CCTTCCTCCA
    GGCGGCAATC GACGTGGCGA GGCGGCGGTC CGACCTGTTC CGCGACCCCT
    CCGCGGTGAG CAGGGTCACA TCGATGGCGT CGGCGGCGAG GGCGGTGGTG
    GAGGCGGAGG AGAGGAAGGC GAGGGAGGCC AAGAGGAAGG CGGAGGAGGC
    GGAGAGGAAG GCGGCCGAGG CCGAGAGGAA GGCGAAGGCG CCCGCGGAGC
    CGAAGCCGGA GAGCTCGGCG GGGAAGGATA GCATGGAGGT GGACAAGAAG
    GAGGAGGGCA ACGTGAGGAA ACCAAATGCT GGCAATGGTC TTGATTTGGA
    GAAGTACTCT TGGATTCAGC AATTGCCAGA GGTTACCATC ACCGTACCTG
    TTCCTCAAGG AACGAAGTCA AGGTTTGTCG TCTGTGATAT TAAGAAGACC
    ATCTGAAGGT TGGGCTGAAG GGCCAGCCTC CTATCATTGA TGGTGAGCTT
    TTCAAACCAG TCAAAGTTGA TGACTGCTTC TGGAGCATAG AGGATGGAAA
    ATCGCTGTCC ATTTTGCTGA CAAAGCAAAA TCAAATGGAG TGGTGGAAAT
    CCGTAGTGAA GGGTGACCCT GAAGTTGATA CACAGAAGGT GGAACCGGAG
    AACAGCAAAC TCGCTGATTT GGATCCAGAG ACTCGACAAA CTGTGGAGAA
    GATGATGTTT GATCAACGCC AGAAGCAGAT GGGTCTTCCA ACAAGTGATG
    AAATGCAGAA GCAAGACATG CTCAAGAAAT TCATGGCTCA GCACCCGGAG
    ATGGACTTCT CCAATGCAAA AATAGCTTAG AACTTATAAA TCGAGAGTGA
    CCAGCAGTAT GGAGAAGGTT GGAGATGCTG AATGGAGAAC TACATTTCAT
    CTCGTTCTTA GTGTCTGTCG ATGGATGGTT TACGGGTAGT GTCTGTCGAT
    GGATGGTTTA CGGGTTTAGC CGTGAGGTGA TTGGCCTCAC GTCATTTTGT
    GAATTTTGTG TTCTTCAGAA ACGTGAATCC GTGCTGTTTC CTGAACCTTT
    GAATGGATAG TAAAATCAGT TGCACCCCAG TG

    Gene models with high sequence identity

    1. AT5G53400.1 [+] show detail - HSP20-like chaperones superfamily protein
      E-value: 4e-71; Score: 75.10

     

    InterPro Scan Digest

    Program Description E-value
    superfamily HSP20-like chaperone 0.0000000064
    ProfileScan CS-like domain 12.667
    Gene3D no description 6.7e-29
    Gene3D no description 0.0000067
    HMMPanther NUCLEAR MOVEMENT PROTEIN NUDC 1.4e-81
    HMMPanther NUCLEAR MOVEMENT PROTEIN NUDC 1.4e-81
    HMMPanther NUCLEAR MOVEMENT PROTEIN NUDC 3.1e-16
    HMMPanther NUCLEAR MOVEMENT PROTEIN NUDC 3.1e-16
    FPrintScan PRICHEXTENSN 0.000000000041
    FPrintScan PRICHEXTENSN 0.000000000041
    FPrintScan PRICHEXTENSN 0.000000000041
    HMMPfam CS domain 0.0000000016
    HMMPfam CS domain 0.0000078
    Coil coiled-coil 0

    See the detailed result >

    AT5G53400.1

    Model type
    Protein coding
    Short Description
    HSP20-like chaperones superfamily protein
    Curator Summary
    Encodes BOBBER1 (BOB1), a non-canonical small heat shock protein required for both development and thermotolerance. BOB1 is cytoplasmic at basal temperatures but forms heat shock granules containing canonical small heat shock proteins at high temperatures.
    Computational Description
    BOBBER1 (BOB1); CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G27890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR