K31008

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31008

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31008

Determination of introduced cDNA(s)

  • J033105K15 - Rice Full-length cDNAs - Original: J033105K15

    full reading [+] show sequence

    Nucleotide sequence: J033105K15 - full reading 
    GAGAGCTTCG CTCAGCTCCT CTCCCCTTCT CCCTCTCCCT CTCCAGGCGC 
    TGCTGCTCCG CGAACCCTAG CCATGGCGCG AGTCCACCAC AAGAACGGTC 
    GCGGCGGCGG CGGTGGCGGC GGCGGTGGCA AGGGCAAGGG CAAAGGCAAG 
    TGGAAGATGC CGGCGTCGGT GGCGCGGAAG CAGCAGGCAG CGATGGCGAA 
    CGTGGACCAG GTCACTGGCG ACAAGATCCC CAAGAGCTTC GTCTTCTCCC 
    GCGGCAAGCT GCCCTCCACG CTCCGCCATC TCCAGCAGGA TCTCCGCAAG 
    GTCATGCTCC CCTACACCGC CCTGAATCTC AAGGAGAAGA AACGGAACAA 
    CCTCAAGGAT TTCGTCAACG TCTCCGGCCC GTTGGGCGTG ACGCATTTCT 
    TCATCCTCAC GAACCCCAAG AGCTCGCCGC ACTTGCGCAT GGCGAAGACG 
    CCGCAGGGTC CTACCTACAC ATTTCAGATA AAGGAGTATG CTCTCGCCGC 
    CGACATTGCG AACTCACAGA AGCGACCGAG GTGTCCCCCA GAGATATTCA 
    AGAATTCACC TCTGACTGTA CTCAGTGGCT TTGGCGGTCT TGGCGAGCCT 
    TTCAAGAGTT TGGTCGAATA TTTTCGGCAT ATGACCCCTG CTATTGATCC 
    AGTCACTGTT AAGCTGTCAA CCTGTCAAAG GATTCTGTTG ATACATTTCG 
    ACAGAGAAAA GGAAATGATC AATTTCAGGC CCAGGCTCTG AGGGACTCCA 
    GCATGGCCGG CTACATGTCT AGCAAGAAGA CCATGGAGAT CAACCCGGAG 
    AATGCCATCA TGGACGAGCT CCGCAAGCGT GCCGATGCGG ACAAGAATGA 
    CAAGTCCGTG AAGGACCTGG TGATGCTGCT CTTCGAGACT GCCCTGCTGA 
    CCTCCGGTTT CAGCTTGGAG GACCCCAACA CCTTCGGCAC CAGGATCCAC 
    CGCATGCTCA AGCTCGGCCT GAGCATCGAC GAGGACGAGT CCGCCGAGGC 
    TGACGCCGAC ATGCCGCCGC TGGAGGACGA CGCCGGCGAG AGCAAGATGG 
    AGGAGGTCGA CTAAACGTCA TGGACCCATG GATGCCATTC TGTCCCTTCT 
    AGTTATCCCT CTCCTAGTTC TCTTCTCATA GCTATCTGAC TGCTGCTGTT 
    CGCTTTCTTT TTGGTACGTT GGATGCATCA GTTTTGTCTT TGTCTTAGCT 
    CTTAAACAAT GCGTGGTACC TTGTCATACT GTTTGCGTTG CAATGCTACT 
    AGCCGAAGTA TATGCCAGCT TCTTATTC

    Gene models with high sequence identity

    1. AT5G61770.3 [+] show detail - PETER PAN-like protein
      E-value: 1e-50; Score: 197.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily HSP90 C-terminal domain (C-terminal part of P 9e-17
    HMMSmart Brix domain 4.3e-23
    ProfileScan Brix domain 21.914
    HMMPanther PETER PAN-RELATED 1.4e-67
    HMMPanther Chaperone protein htpG 8.3e-70
    HMMPfam Brix domain 5.4e-35
    HMMPfam Heat shock protein Hsp90, C-terminal 1.4e-42

    See the detailed result >

    AT5G61770.3

    Model type
    Protein coding
    Short Description
    PETER PAN-like protein
    Computational Description
    PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR