K31029

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31029

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31029

Determination of introduced cDNA(s)

  • J033115K05 - Rice Full-length cDNAs - Original: J033115K05

    full reading [+] show sequence

    Nucleotide sequence: J033115K05 - full reading 
    GATTTTTCTC CCCCAAACCT TTTCGCCCTT CGCCGGCGGC GGCGGCGGCG 
    GCGGCGCAGC GAGGCGGCGA TGCCTCCCAA ATCTGATAGC GTCGAAGGAA 
    TCGTCCTCAG CTTCGTCAAT GAGCAAAATA GGCCATTGAA TTCTCAGAAT 
    GTAGCCGATG CGTTGCAAAA GTTTAGCCTC AAGAAGACCG CAGTGCAAAA 
    GGCATTGGAT GCATTGGCTG ACAGTGGACA GATTTCCTTC AAGGAGTATG 
    GCAAGCAGAA AATATATCTT GCTCGTCAAG ATCAATTCAA CATCCCAAAT 
    GGGGAAGAAC TTGAGGAGAT GAAGAAAGCA AATATCAAGC TACAGGAAGA 
    ACTTGCGGAT CAAAAGAAAG CAATTAGTGA GGTAGAATCT GAGGTACGAG 
    GTCTGCAGTC AAACTTGACT TTAGCAGAGA TCAAGTCAAA GGAAGCTAAA 
    TTGCAAAGAG AAGTCCAGGA AATGGAAGAG AAACTAAATA AATTGAGGAA 
    TGGTGTTATC TTGGTGAAAC CTGAGGACAA GAAGATTATT GAAGAGAGCT 
    TCTCTGAGAA AGTTAACCAG TGGAGAAAGC GAAAGAGGAT GTTCAAGGAG 
    CTATGGGATA ATATCACTGA GAATAGCCCT AAAGACCAGA AGGAATTTAA 
    GGAAGAGCTT GGTCTCGAGT ATGATGAAGA TGTCGGTGTT AACTTGCAGT 
    CTTACAGTGA CATGCTGACG AGTCTCAGTA AAAGAAGGAA AGTATCCCGC 
    TGATCATCCA GCATGGGAGT TTCTCAAATC AAATGTAGGT TACATGAGAG 
    AAGTTTTACC AGCTACAGGC CTACAGTTCA TGAATACTCG TAGTCCAGAC 
    CCGGTCATAT CTGCTGTTGA AATTTCTAGT TAATGCATAT AAGTTAGTAG 
    TATCGCTGCA TTAGTTTATT TCCCCAGAGG TAACGAGATT AGAGGAATAT 
    TTTGGTCCCA GTTGTTGTAA TATAAAATCA ATCCATCCTC TAATATATCT 
    ACAATCAATG ATGAAACCTG CCATCAATAT ACAATGCTGA CTTTTGCTCC 
    CTCC

    Gene models with high sequence identity

    1. AT1G13330.1 [+] show detail - Arabidopsis Hop2 homolog
      E-value: 7e-89; Score: 324.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther Tat binding protein 1-interacting 1.8e-81
    HMMPfam Tat binding protein 1-interacting 6.1e-48

    See the detailed result >

    AT1G13330.1

    Model type
    Protein coding
    Short Description
    Arabidopsis Hop2 homolog
    Curator Summary
    Encodes the Arabidopsis Hop2 homologue. In other species, Hop2 is proposed to be involved in inter-homolog bias in double strand break repair.
    Computational Description
    Arabidopsis Hop2 homolog (AHP2); CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776); Has 3022 Blast hits to 2708 proteins in 418 species: Archae - 82; Bacteria - 427; Metazoa - 1139; Fungi - 246; Plants - 98; Viruses - 21; Other Eukaryotes - 1009 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR