K31046

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31046

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31046

Determination of introduced cDNA(s)

  • J013052P13 - Rice Full-length cDNAs - Original: J013052P13

    full reading [+] show sequence

    Nucleotide sequence: J013052P13 - full reading
    GTCGCGGCGA TCAAAAAAAC CCAACCCCTC CTCTCCTCGC CGCCGCCGCC 
    CATGGCCAGC GACCGCCGCT ACTACTACTT CGAAGAAGAC GATGGCGATG
    GCGAGGAGGA GGTGGAGTGG CTGGCGATGG AGGCCGACGA GGACGACGTC
    GGCCTGCTCG AGGAGGACGA CCTTCACCTG CGGCTTCCCG ACGACCGCCC
    CGCGGATTGC TGGGCCATCA CACAAGAGTC ACTTCCTGCT GCCCAGCAAC
    AAGACCTGTC TATGGTAATG AACTTGCTCA ACATAAAGCA GCACCTTGCA
    CGCACACTCC TTATCCACCA CCGGTGGAAG ATGCATTGCA TTTATGATCA
    CCTTGACAGA AAGGGGCGGG ACCGCATGCT CAGTGAGGCA TGCATTATTT
    TGCCGAAGAA TAGCATGTCA GCAGCTAGCT CAACAAGTGT TACCTGCAAT
    GTGTGTTTTG AGGACTTCTC AATGACTGAT GTCTCGACCA TGGACTGTGG
    GCATTGCTTC TGCAATGACT GTTGGACAGA GCACTTCTTT GCATCCATTA
    ATACTGGCAA CAAGCAGATT CGGTGCATGG AGGTTAAGTG CAAGGCCATT
    TGTGATGAGG ACATTGTGCG CCGCCTCCTC AGTCTGAAGT ACCCTGCTGC
    ATCTAAGCGC TTCGATCTCC TCCTACTTGA GTCTTACCTT GAGGACAATG
    ACTCAGTGAA GTGGTGCCCC AGTGCCCCAC ACTGTGGCCG CGCAATCCAG
    GTAGGCACCG GCGAGAGGTA CTGCGAGGTC GCTTGCCCCT GTGGTGTCAG
    CTTCTGCTTC AACTGTGCAG GGCAGGTGCA CTCGCCTTGC CCATGTGCCA
    TATGGGAGAA GTGGAAAGCT AAGGGCCATG GAGACTCGGA TAGCGTCAAG
    TGGATTCTTG CCAACACCAA GAGCTGCCCC AAGTGCTCCA AGCCCATCGA
    GAAGAACGGT GGCTGCAACC TTGTCCATTG CAAGTGCGGC CAGTGTCTAT
    GCTGGCTCTG TGGTGGGCCT ACCGGGAGGG AGCACACTTG GGATAGCATC
    TCCGGCCACA GCTGCAACCG CTACAAGGAG GAAAACGGCG ACAAGGTGGA
    CACCAGCAGA CAGCAGATGC AGCGGTACAC GCACTACTGG GACCGTTACA
    ACATCCACGC CGGCTCGTAC AAGGTGGAGC AGAAGGATCT TGGGCCTGCC
    GTCGAGGAGC AGGTGAAGAA GCTGGAGTCG AACCTAACAG GTCCGAAGAT
    GAACTGGGAC GGTAGCTGGC TCGCCATGGC GTACCAATCC CTGCTCGCAT
    CGCGGCAGGT GCTGTCGCGG TCGTACGCCT TCGCCTACTA CATGTTTGGC
    GGCGGCGAGG TGAAGACGCG CCCGTCGGAG CGGGCGAGCC TCGCCGTGGC
    GCAGAACCTC TTCGAGGACC GGCAGGAGCA GCTGGAGCGC CACGTTGAGC
    ATCTCTCCAA GGAGCTCGCC ACGGACTTGC TGGGGCTGCC GGAGGAGGAG
    ATCGTCCTGA AGAAGGTGGA GATTGCCAAC CTCGCCAAGA TCGTCCAGGC
    AATCTGCGGG CAGTTGTACA GGTGCATCCA GGACGAACTC CTGCCACTGC
    TCGTCCAGCC CATGAACATT GCCGCGTACC AGCCGGACGG CCCTGACAAG
    GCCAAGGAGT TCATCGGGGC TTGACATACA GACAAGGCTA GCTTCCAGTT
    TGGCAGCTGC CGCTAACCTC ACTGTGCTTA TCAGGTAAGT TATATATATA
    TATGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
    TCAGTATGTA GATTTGACTT ACTTACGCCT GAGCGAAGGA CGTAATGTTC
    ATTCGAAATT AAAGTGCTAT ACTTGCCTTA TTTTTTGGTT GTTGGGGCGT
    ATTTTGGTTT CAAAATAGTA TTCTAAGCAT TGACCATTCT TCTCATAAGA
    TAGATAATTC TTTTTTTTTC CGTGAGGC

    Gene models with high sequence identity

    1. AT4G34370.1 [+] show detail - RING/U-box superfamily protein
      E-value: 5e-132; Score: 468.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C6HC-type 1.1e-10
    HMMPfam Zinc finger, C6HC-type 8.7e-06
    HMMSmart Zinc finger, C6HC-type 8.2e-15
    HMMSmart Zinc finger, C6HC-type 0.24
    ProfileScan Zinc finger, RING-type 9.421
    HMMPanther RING ZINC FINGER PROTEIN-RELATED 1.4e-151
    HMMPanther ARIADNE RING ZINC FINGER 1.4e-151
    Coil coiled-coil 0
    superfamily RING/U-box 4.9e-13
    superfamily RING/U-box 2.3e-10

    See the detailed result >

    AT4G34370.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    ARIADNE 1 (ARI1); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G16090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR