K31104

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31104

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31104

Determination of introduced cDNA(s)

  • J033105O21 - Rice Full-length cDNAs - Original: J033105O21

    full reading [+] show sequence

    Nucleotide sequence: J033105O21 - full reading
    GACCACACAC ACCCACACTG GCAGCAGCTC ATACACATAG CTAGCTCAGC 
    TGAGACACAC ACACACACAG TGAGTAGTTC AGCTCAAAGC TAGCATCAGC
    AGCAGAGCTA ATTAACAAAC ATGGCGTCCG GGAGCAGCGG CGGCGGCTAC
    GCGGACGAGA AGGGGCCGGG GGCGGCGACG ATGCAGGCGC TGGGGCTGCA
    GCAGCAGCAC GGCGGCGGCG GAGAGGTGGA AGAGGAGTCG TCGGAGATGG
    GGGAGAAGAC GGCGGCGAGG ACGCGGCTGT CGGGGCTGCT GTGGCACGGG
    GGGTCGGCGT ACGACGCGTG GTTCAGCTGC GCGTCGAACC AGGTGGCGCA
    GGTGCTGCTG ACGCTGCCCT ACTCGTTCGC GCAGCTGGGC ATGGCCAGCG
    GCCTCCTCTT CCAGCTCTTC TACGGCCTCC TCGGCAGCTG GACCGCCTAC
    CTCATCAGCA TCCTCTACCT CGAGTACCGC ACCCGCAAGG AGCGCGACAA
    GGTCGACTTC CGCAACCACG TCATCCAGTG GTTTGAGGTG CTGGATGGGC
    TACTGGGGAG GCACTGGAGG AATGTGGGAC TGGCCTTCAA CTGCACGTTT
    TTGCTGTTCG GGTCGGTGAT CCAACTGATC GGGTGTGCCA GCAACATCTA
    CTACATCAAC GACCATCTGG ACAAGCGGAC ATGGACGTAC ATCTTCGGCG
    CCTGCTGCGC CACCACCGTC TTCATCCCGT CATTCCACAA CTACCGCATT
    TGGTCCTTCC TCGGCCTCCT CATGACCACC TACACCGCCT GGTACATCGC
    CGTCGCCTCC CTCATCCACG GACAGGTGGA GGGTGTGGCG CACTCTGGGC
    CCACAAGCAT CGTGCTCTAC TTCACGGGGG CCACCAACAT CCTCTACACC
    TTCGGGGGCC ACGCTGTCAC CGTGGAGATA ATGCACGCGA TGTGGCGGCC
    GCAGAAGTTC AAGGCGATCT ACCTGCTGGC GACGGTGTAC GTGCTGACGC
    TGACGCTGCC GTCGGCGTCG GCGGCGTACT GGGCGTTCGG GGACGCGCTG
    CTGACGCACT CGAACGCGCT GGCGCTGCTG CCGCGGACGC CGTGGCGCGA
    CGCCGCGGTG GTGCTCATGC TCATCCACCA GTTCATCACC TTCGGCTTCG
    CCTGCACCCC GCTCTACTTC GTCTGGGAGA AGCTCGTCGG CCTCCACGGC
    TGCCCCTCCC TCTGCAAGCG CGCCGCCGCC CGCCTCCCCG TCGTCCTCCC
    CATCTGGTTC CTCGCCATCA TCTTCCCCTT CTTCGGCCCC ATCAACTCCG
    CCGTCGGCTC CCTCCTCGTC AGCTTCACCG TCTACATCAT CCCCTCCCTC
    GCCTACATGG TCACCTTCCG CTCCCCGCAA TCCCGCCAGA ACGCGGTGGA
    GCGGCCGCCG AGGTTCGCCG GAGGATGGAC GGGGGCGTAC GTGATAAACT
    CGTTCGTGGT GGCGTGGGTG CTGGTGGTCG GCTTCGGCTT CGGCGGGTGG
    GCGAGCATCA CCAACTTCGT CCACCAGGTC GACACCTTCG GCCTCTTCGC
    CAAGTGCTAC CAGTGCCCGC CTCACCCCGC CGCCGCCGCC CTCTCGCCGC
    CGGGTGCCAT CGCTCCGGCG CCGGCCTCGA TGCTGCCGCC GTTCAACTCC
    ACCGCCGCCG GCATCTTTGC CGCTCCGGTG CCGTCTCCTG CTCCGGCTCC
    GGCACCGATG CATTTCGTCC TTGGTCACCA CCACCATCAC CGGCACCACC
    GCCACGGCCT CTAGCTAATT AATCGAGATC AATCAAGATC ATGATTATCA
    GAGGTTGGGT TTGCATTATT GCACTAGTTT TTAGCGAGCT ACTAGCTAGT
    TGATCATCAC TGCAAGATTG TTAATTAGCG CTAGTAATTA GTAAAAGTAA
    GCCTCTTTTC CTAATCCTAT TGTATGCTTT GCTTCTTTCT TCTTCTTCTG
    GTTACTGAGA GAGAGTGAGA GTGAGAATGT TTGGTGGTGG GGTATGCATG
    TCAGAGACAC GTTTC

    Gene models with high sequence identity

    1. AT2G21050.1 [+] show detail - like AUXIN RESISTANT 2
      E-value: 0; Score: 703.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AUX1-LIKE AMINO ACID PERMEASE 0
    HMMPanther AMINO ACID TRANSPORTER 0
    Coil coiled-coil 0
    HMMPfam Amino acid transporter, transmembrane 2.7e-71

    See the detailed result >

    AT2G21050.1

    Model type
    Protein coding
    Short Description
    like AUXIN RESISTANT 2
    Curator Summary
    Encodes LAX2 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
    Computational Description
    like AUXIN RESISTANT 2 (LAX2); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUX1 3 (TAIR:AT1G77690.1); Has 1017 Blast hits to 1012 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 224; Plants - 668; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR