K31109

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31109

Determination of introduced cDNA(s)

  • J013074E05 - Rice Full-length cDNAs - Original: J013074E05

    full reading [+] show sequence

    Nucleotide sequence: J013074E05 - full reading 
    GTAGCCGCCT GCCATCTTCC TTCCTTCCTC TAGTTGTTTG ACAGTATATG 
    TTTGATTAGT TCTGGTTGTA GACTTGTATG CACAACATGT TGATCAACTA 
    GATGTCGCTG TCAAACTAAA GGCAACGGAT AAGGATTGCT CTAATCCAAT 
    CCAGTCTTCA TCCACCACAT ACTTGGAGAC AATCTATATC TGCTCGACAA 
    ATAGGATATG AATCAGCATG GACCATGTCC CGTGTGGACT GGAAAATTCG 
    CGAAAAGAGT CCCCGGTCTT TTTAATATTT ATCCCTGTTA GGAACCAACT 
    CAATCTCAAT CTCGCCACCC AAACCACCAA CCTCGAAATT TCTGTAGTGA 
    TAACATACTA AAATCATCTC TCTGACAAAT TATCTTTCAT GTCATGCAGG 
    GCATCAGCAA AGGTGTGGTT GTGGACAACC TCTTGTCATC CATGGTGAGC 
    CGAGGGAAGG CGCCCGATTT CGTGCTGTGC ATTGGGGACG ACCGGTCGGA 
    CGGGGACATG TTCGAGAGCA TCGTTTGCCC GTCGAACAGC AGCGTCAAGC 
    TCCCGGCGAG CAGCGAGGTG TTCGCCTGCA CGGTCGGCAA GAAGCCGAGC 
    ATGGCCAAGT ACTACCTCGA CGACACGGTC GACGTGATCA AGATGCTGCA 
    GGGTCTCGCC AATGCGCCAT CGCAGCGGCC AAGGCAAGTG CAGCTGCGGG 
    TCTCGTTCGA AGGCTCACTG TGACGGAGAC AGGGATTATT CTGCACAGTA 
    TAAAAACCAA GGAGGAAATT CCAATAACAA ATGGAAAAGA TGATGATGAT 
    TCAGTTCGTG TGGTTTAGGG GTTAGCTGCA GAAGTTACAG GATAAACAGG 
    TTTTTTTTTG TTTTTTTTTC TTCTTTTTCT TTCAACATTT TCAGCCTTCT 
    TCCATGCTTG TATATGCCCC GTATGATAAA AATATGCGAG AAGGTTTCAG 
    CCACCTTGTA TATGTAGTTG ACGATGACGA TGAAATCAGA ACCAAAAAAA 
    AAAAAAAAGG AAAAATGATT CTTTCTTC

    Gene models with high sequence identity

    1. AT1G60140.1 [+] show detail - trehalose phosphate synthase
      E-value: 2e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Trehalose-phosphatase 4.6e-15
    HMMPanther TREHALOSE-6-PHOSPHATE SYNTHASE 1.9e-13
    Gene3D no description 1.6e-08
    superfamily HAD-like 6.1e-08

    See the detailed result >

    AT1G60140.1

    Model type
    Protein coding
    Short Description
    trehalose phosphate synthase
    Curator Summary
    Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.
    Computational Description
    trehalose phosphate synthase (TPS10); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 9 (TAIR:AT1G23870.1); Has 4634 Blast hits to 4564 proteins in 1018 species: Archae - 52; Bacteria - 2697; Metazoa - 162; Fungi - 655; Plants - 601; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR