K31126

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31126

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31126

Determination of introduced cDNA(s)

  • J033091A05 - Rice Full-length cDNAs - Original: J033091A05

    full reading [+] show sequence

    Nucleotide sequence: J033091A05 - full reading 
    GACCCCTCCT CCTCCACTCG CCCCGCTTCG CCGCCGCACT GACCACGCCG 
    CCGCCGCCGC CGCTGCCACC GGCGCGCCGC CTCGTCGCCG CCGCTGCAGG 
    AGGAGACCTA TCGCTCGCGA TGTCGGCGGC AACCGGGGAG TACCCGGTCC 
    CGGTCTCCCC TCCCTACCCG GCGGCGTCCA AGGACGTGGA GCTCCGGCGC 
    GCCATGACGG CCTCGGCGCG CTCCGCCGCC TACTCCTCCG CGCCCGTCGT 
    GTTCGAGGAC GAGTGGCTCG CCGTCGTCGA CAAGCCCGCG GGAGTCTACT 
    GCGACGCCCT CCTCTCCGCT CTCCCTTGCT CCGCTGCCAC ATTAGGGGAT 
    GAAGCAACTA AACCTAACCT TCACCTCGCC AACAGGCTAG ACCGTGATAC 
    CAGTGGGCTC ATGGTTATTA CCAAATGCAA TAAGGTTGCT GGGAAGCTAG 
    TGAAGGCGTT TACAGAGCAC AAAGTTAAGA AAACATATCT AGCTCTTTGC 
    ATAGGTTACC CACCAGCATG GGAGAAGATT AAGATATGCT CTGGCCATGG 
    TCGATCAAAA CATGGTGCTT GGCGTGTGTA CGCTATGTCT GATGTTGGAC 
    GATCACTACC AGGGGGTTCC GTTGTACGCG ACATGAGTAC ACGATTTGAA 
    GTTCTGGGAA TCAATGGCAA GGGACAGTTT AGAGAACCAT CTAATTTTGA 
    AGTTGATGAA ACAGAGTCTA TTACCGTACA AGAGAAGGCA GCTGACCTGA 
    CTTCAGATGG TGATGAGAAG AACAGCATAA TTTTGGTTAG AGCCTATCCT 
    CAGAGTGGAC GAACACATCA GATTCGTCTG CACTGTCAGT ATCTTGGGTT 
    CCCTATCAGA GGTGATGTGA AGTACAGCGG AGTTATTGAG TGGAATGGTG 
    TGGATTATGA TGGCCATGCA TTGCATGCTG AGAGCTTGTC ATTTGTACAC 
    CCAGTCACTG GATTGCCAGT CACCTTCCGG TCACCTCTCC CTTCATGGGC 
    GAATGAATTT ATTTCGACGA TGGCATAAGT TCTTTCAACG TTATTATGAA 
    CTTGTGGATG CATTGCCTCC CAATTGATGC TGATTTTTTA TTTTTTAACC 
    AAGAGCACAT CCCTAAACTG TCGAAAGCAA CTCTTGGAGC TATCTTCGGG 
    GAGAAGTATT GGTCAGTGCC CAGTTGTCAT ATAACAATCT CCTCCAGCAA 
    AACAGTGCCT TCTTGGTCGT TGTTCGTGGA TATCAGTACT TTGTG

    Gene models with high sequence identity

    1. AT1G56345.1 [+] show detail - Pseudouridine synthase family protein
      E-value: 4e-82; Score: 302.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pseudouridine synthase, catalytic domain 1.2e-45
    HMMPanther RIBOSOMAL PSEUDOURIDINE SYNTHASE 5.1e-47
    PatternScan Pseudouridine synthase, RluC/RluD, conserved site 0
    HMMPfam Pseudouridine synthase, RsuA and RluB/C/D/E/F 5.5e-29

    See the detailed result >

    AT1G56345.1

    Model type
    Protein coding
    Short Description
    Pseudouridine synthase family protein
    Computational Description
    Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); Has 16985 Blast hits to 16836 proteins in 2654 species: Archae - 12; Bacteria - 12887; Metazoa - 225; Fungi - 200; Plants - 183; Viruses - 0; Other Eukaryotes - 3478 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR