K31126

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31126

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31126

Determination of introduced cDNA(s)

  • J033091A05 - Rice Full-length cDNAs - Original: J033091A05

    full reading [+] show sequence

    Nucleotide sequence: J033091A05 - full reading
    GACCCCTCCT CCTCCACTCG CCCCGCTTCG CCGCCGCACT GACCACGCCG 
    CCGCCGCCGC CGCTGCCACC GGCGCGCCGC CTCGTCGCCG CCGCTGCAGG
    AGGAGACCTA TCGCTCGCGA TGTCGGCGGC AACCGGGGAG TACCCGGTCC
    CGGTCTCCCC TCCCTACCCG GCGGCGTCCA AGGACGTGGA GCTCCGGCGC
    GCCATGACGG CCTCGGCGCG CTCCGCCGCC TACTCCTCCG CGCCCGTCGT
    GTTCGAGGAC GAGTGGCTCG CCGTCGTCGA CAAGCCCGCG GGAGTCTACT
    GCGACGCCCT CCTCTCCGCT CTCCCTTGCT CCGCTGCCAC ATTAGGGGAT
    GAAGCAACTA AACCTAACCT TCACCTCGCC AACAGGCTAG ACCGTGATAC
    CAGTGGGCTC ATGGTTATTA CCAAATGCAA TAAGGTTGCT GGGAAGCTAG
    TGAAGGCGTT TACAGAGCAC AAAGTTAAGA AAACATATCT AGCTCTTTGC
    ATAGGTTACC CACCAGCATG GGAGAAGATT AAGATATGCT CTGGCCATGG
    TCGATCAAAA CATGGTGCTT GGCGTGTGTA CGCTATGTCT GATGTTGGAC
    GATCACTACC AGGGGGTTCC GTTGTACGCG ACATGAGTAC ACGATTTGAA
    GTTCTGGGAA TCAATGGCAA GGGACAGTTT AGAGAACCAT CTAATTTTGA
    AGTTGATGAA ACAGAGTCTA TTACCGTACA AGAGAAGGCA GCTGACCTGA
    CTTCAGATGG TGATGAGAAG AACAGCATAA TTTTGGTTAG AGCCTATCCT
    CAGAGTGGAC GAACACATCA GATTCGTCTG CACTGTCAGT ATCTTGGGTT
    CCCTATCAGA GGTGATGTGA AGTACAGCGG AGTTATTGAG TGGAATGGTG
    TGGATTATGA TGGCCATGCA TTGCATGCTG AGAGCTTGTC ATTTGTACAC
    CCAGTCACTG GATTGCCAGT CACCTTCCGG TCACCTCTCC CTTCATGGGC
    GAATGAATTT ATTTCGACGA TGGCATAAGT TCTTTCAACG TTATTATGAA
    CTTGTGGATG CATTGCCTCC CAATTGATGC TGATTTTTTA TTTTTTAACC
    AAGAGCACAT CCCTAAACTG TCGAAAGCAA CTCTTGGAGC TATCTTCGGG
    GAGAAGTATT GGTCAGTGCC CAGTTGTCAT ATAACAATCT CCTCCAGCAA
    AACAGTGCCT TCTTGGTCGT TGTTCGTGGA TATCAGTACT TTGTG

    Gene models with high sequence identity

    1. AT1G56345.1 [+] show detail - Pseudouridine synthase family protein
      E-value: 4e-82; Score: 302.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pseudouridine synthase, catalytic domain 1.2e-45
    HMMPanther RIBOSOMAL PSEUDOURIDINE SYNTHASE 5.1e-47
    PatternScan Pseudouridine synthase, RluC/RluD, conserved site 0
    HMMPfam Pseudouridine synthase, RsuA and RluB/C/D/E/F 5.5e-29

    See the detailed result >

    AT1G56345.1

    Model type
    Protein coding
    Short Description
    Pseudouridine synthase family protein
    Computational Description
    Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); Has 16985 Blast hits to 16836 proteins in 2654 species: Archae - 12; Bacteria - 12887; Metazoa - 225; Fungi - 200; Plants - 183; Viruses - 0; Other Eukaryotes - 3478 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR