K31131

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31131

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31131

Determination of introduced cDNA(s)

  • J013038A03 - Rice Full-length cDNAs - Original: J013038A03

    full reading [+] show sequence

    Nucleotide sequence: J013038A03 - full reading 
    GACCTGGCAC TCGGGCGGCG GCGGCAATGG CGGAAGAGGG GAGGAGCGGC 
    GGCGTCGCCG GAGACGGCGT CCGGGTGTGC GTCACCGGAG GCGCCGGCTT 
    CATCGCCTCG TGGCTCGTGA AGAAGCTCCT CGAGAGAGGC TGCATCGTCC 
    ATGCCACGCT GCGAAGCATG GGAGATGAGG AGAAGGCCGG GCTGCTCCGG 
    CGGCTCGTCC CCGGCGCGGC GGAGCGGCTG CGGCTGTTCG AGGCCGATCT 
    CTTCGACGCC GCCACCTTCG CGCCGGCGAT CGCCGGCTGC CAGTTCGTCT 
    TCCTCATCGC CACGCCGTAC GGGCTGGAGG CCTCCAACTC CAAGTACAAG 
    AACACGGCGG ATGCGGCAGT GGACGCGGTG CGCGAGATCC TCCGGCAATG 
    CGCGGAATCC AAGACGGTGA AGCGCGTCAT CCACACCGCC TCGATATCCA 
    CCGCCTCGCC GTTGATCGAC GTCCCCGGCG CCGGCGTCGG CGCCGCCGGG 
    TACAGGGACT TCATCGACGA GTCCTGCTGG ACTCCGCTCG ACGTCGACTA 
    CCCACTCCGG AGCGCCCACT TCGACGTGAT CTCTCCTCCT CTGTTCTTCC 
    TCCTCCAATC AAGAACACGA TGAAGCAAAA AACAGAAGAA ACCAAATTAA 
    ACATTGTTTT GCAGAAGTAC GTGCTGTCGA AGATGATGTC GGAGAAGGAG 
    CTCCTGGGCT ACAACGACGG CGAGGGCCGG GCGTTCGAGG TGGTCACCCT 
    GCCGTGCGGC CTCGTCGCCG GCGACACGGT CCTCGGCCGC GCCCCGGAGA 
    CGCTGGAGAA CGCCGTGTCG CCGGTGTCCC GGAACGAGCC GTCCTTCGCG 
    TTCCTGAGGC TGCTGCAGAG GCTGGTCGGG TCGGTGCCGC TGGTGCACGC 
    CGACGACGTC TGCGACGCGC TCGTCTTCTG CATGGATCAG CCGTCGCTCG 
    CCGGCCGCTT CCTCTGCTCC GCCGCCTACC CGACCATCCA CGACATCGTC 
    GAACACTTCG CCGCCAAGTA CCCTCACCTC GACGTCCTCG AAGAGCCGGA 
    GAGGGAGGTG GCGAGGGTGC AGCCGGCGGC AGACAAGCTG GGTGAGCTGG 
    GGTTCAGGTA CAAGTACGGC ATGGAGGAGA TACTCGACGG CAGCGTCGGC 
    TGCGCGGCGA GGCTGGGTTA CATCGACGCA GCCAAGCTCA GGCCGCAGGA 
    AGGATGAATC TGCTACAGAT TTGCAGGATG AAGAAGATGG ATGATATTTG 
    TTCGGTTTTG AACAAGTTTT TGGTGTTTGT TTGTAATCTC ATGTGTTCTG 
    AATACCTCTC TCATGTATCA CATGACGCAT TTCTGCGTCA GAGAACGATA 
    TTAATAAGTA CTCCGTGGAG CTCGCTAGGC ACTTGAGTT

    Gene models with high sequence identity

    1. AT2G45400.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 2e-39; Score: 75.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NADHP HC TOXIN REDUCTASE 2e-90
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 2e-90
    HMMPanther NADHP HC TOXIN REDUCTASE 1e-100
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1e-100
    superfamily NAD(P)-binding domain 1.2e-11
    superfamily NAD(P)-binding domain 3e-25
    HMMPfam NAD-dependent epimerase/dehydratase 1.4e-10
    Gene3D NAD(P)-binding domain 1.4e-18

    See the detailed result >

    AT2G45400.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Curator Summary
    involved in the regulation of brassinosteroid metabolic pathway
    Computational Description
    BEN1; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, acting on CH-OH group of donors, binding, catalytic activity; INVOLVED IN: regulation of brassinosteroid biosynthetic process, brassinosteroid metabolic process, response to light intensity, flavonoid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 8852 Blast hits to 8839 proteins in 1531 species: Archae - 135; Bacteria - 3285; Metazoa - 357; Fungi - 858; Plants - 2633; Viruses - 7; Other Eukaryotes - 1577 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR