K31133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31133

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31133

Determination of introduced cDNA(s)

  • J033024J06 - Rice Full-length cDNAs - Original: J033024J06

    full reading [+] show sequence

    Nucleotide sequence: J033024J06 - full reading 
    GGCTGCTGCT TCCGATGGCG GCGCCTCCGC TTCCCCGCGC CCCCGTCTCC 
    TCCTCCGCCG CCGCCGCGTC GCCGGGGGGC CGCGCTCTCC TCCTCCTCCG 
    CGTCGGCGGA GGAGGTTCCG GAAGATGCGC TGGCGTGGCG GCGGCGGCGG 
    CACCGGGTTG GCGGCGGCCG TTCCCGGCTG CCTCCGTCGC GGCGCGCTCG 
    GCTGGTACCA CGCCGGGAGA GGTCGCCGTC GATCCTAAGG TCGAAGCAAT 
    ACTAGACAGT GTGAAGTGGG ACAGTAAAGG CTTGGCTGTT GCTATTGCCC 
    AAAATGTGGA TACTGGAGCC ATTCTCATGC AGGGTCTGCC AACAAAGAAG 
    CCCTTGCAAC AACTATATCA ACCAGGAAAG CTACATTCTA TAGCCGTTCA 
    CGGTCTTCAT TGTGGACAAA AGGGGAGACA TCAATGAATT TCATCAATGT 
    GCATGACATT TTCTTGGACT GTGACCGTGA TTCTATAATA TACCTTGGGA 
    AGCCAGATGG GCCTACTTGC CATACAGGGG CAGAGACTTG TTACTATACT 
    TCAGTCTATG ATGCTCTACA AGGTTCGAAG CCCAATCAAG ATAGGCAGGT 
    TGTCTCAACT CTGTACTCAC TTGAAGATAC AATTAGTAGA CGGAAGGAAG 
    AGATAGTTAC TGAAGGAAGT GGCAAGCCAT CATGGACAAA AAAACTAATA 
    CTTGATAACC GGCTGCTTTG CTCAAAAATA AGCGAAGAAG CTGGAGAGCT 
    AAACCAAACA CTGCTTGAGA ACGAGGACGA GAGCCGCACA ATCAGTGAGA 
    TGGGTGATTT GCTATACCAC GCGATGGTGC TGCTTAGGGT CAAGGGCGTG 
    AGGATGGAAC AGGTCTTGGA GGTCCTCAGG AAGCGATTCT CGCAGTCTGG 
    TATTGAGGAG AAGGCCAGTC GCAACAAATC TTAGGATATT ACTCACAGAG 
    TGGATGGGTT TACCAGTTTG CTTATGTCGT ATCGGCATTG GTGCCAAGTG 
    TGTACCATTG AGTAGTTTGG TCTTCTTAAT TAGACCGAAG GTTGTGAATT 
    GTGATTATGC TTTAATTGTT CTCCAATAAG ACACTGAGCA AATACATGTC 
    TGGAATTTGC AGTGCTGTTC TTGCTGTCGC CAATAAAATA ATAAAATCAG 
    CTCATAAGT

    Gene models with high sequence identity

    1. AT1G31860.1 [+] show detail - histidine biosynthesis bifunctional protein (HISIE)
      E-value: 8e-87; Score: 62.40

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Phosphoribosyl-AMP cyclohydrolase 7e-27
    HMMPanther HISTIDINOL DEHYDROGENASE (HDH) 4.6e-33
    HMMPfam Phosphoribosyl-AMP cyclohydrolase 1.4e-28
    HMMPfam Phosphoribosyl-ATP pyrophosphohydrolase-like 0.00000017
    HMMTigr Phosphoribosyl-ATP pyrophosphohydrolase 3.2e-21

    See the detailed result >

    AT1G31860.1

    Model type
    Protein coding
    Short Description
    histidine biosynthesis bifunctional protein (HISIE)
    Curator Summary
    encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.
    Computational Description
    AT-IE; FUNCTIONS IN: phosphoribosyl-AMP cyclohydrolase activity, phosphoribosyl-ATP diphosphatase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyl-AMP cyclohydrolase (InterPro:IPR002496), Phosphoribosyl-ATP pyrophosphohydrolase (InterPro:IPR008179), Phosphoribosyl-ATP pyrophosphohydrolase-like (InterPro:IPR021130); Has 8084 Blast hits to 8082 proteins in 2164 species: Archae - 247; Bacteria - 4946; Metazoa - 2; Fungi - 173; Plants - 52; Viruses - 0; Other Eukaryotes - 2664 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR