K31139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31139

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31139

Determination of introduced cDNA(s)

  • J013108A19 - Rice Full-length cDNAs - Original: J013108A19

    full reading [+] show sequence

    Nucleotide sequence: J013108A19 - full reading 
    GAAGAACCTG GACGCAGAGC AAGAAAATGG ACAGGAAGAG GGTTGGCATC 
    ATCGGCGCCG GTGTGAGCGG CCTAGCAGCA TGCAAGCACT CACTGGACAA 
    AGGATTCAAC CCAATCGTGT TCGAAGCAGA CGACACCATC GGTGGCGTCT 
    GGGCACACAC CTTGGAGTCA ACAAGGCTCC AGGCACCAAC CACGGCATTC 
    AGGTTCTCAG ACCTGGCATG GCCAGCAACT GTGACGGAGA AGTACCCAAG 
    CCATAGGAAG GTCATGGAGT ACCTGAGGTC ATATGCCAGC GAGTTTGATC 
    TCCTCAAGTG CATCAGGTTC AATAGCCAGG TGCTTGGAGT TGAATACCTT 
    GGTGCAACCG AGGGAGAGAT AATGCAGTGG GAGCACTGGT CTGGCAATGG 
    TGAGGCATTT GGTGCTCAGA AAGATGGGGT GTGGCGCCTC ACCGTGAAGG 
    ACTTGAAAAT TGGTAACATT GAGGTTTTTC TAGTGGATTT TCTAATCGTG 
    TGCATTGGAA GGCACAGCGG AAGCCCAAAT ATCCCAGAAT TTCCGGCAAA 
    CAGTGGCCTA GAGTTGTTCA AGGGGAAAAT CTTGCACTCA ATAGATTACT 
    CTTACATGGA TAATGCAGCT GAATTTGTCA AAGGGAAGAA GGTGACTATA 
    ATAGGCTCTG GAAAATCTGC ATTTGACATC GCTGCAGAGG TCGCCAAGGT 
    GAATGGTGAA ACCCAGCCAT GTACCATGAT ATATAGAACA AGGCACTGGT 
    TGGTACACAA ATCTAGTATT TGCGGAGTTG ACCTCAGTTA CTTCTATCTT 
    AACCGTATTT CACAGCTACT AGTTCATAAA CCCGGTGAAG GATTTCTATA 
    TTATGTTTTA GCCACTGCGC TCTCTCCCTT GAGATGGGCA ATCTCAAAAG 
    TAATTGAAAC TTACTTCAAG CAAAGCATTC CTTTACAAAA GCATGGGATG 
    GTTCCTGACT ACAGCTTCTC CTTTGCCATG TCGTCTTGCT TGATTGCAAT 
    GCTACCAGAG GGGTTTTATG ATAAGGTTGA TGAAGGCAGC ATTATTCTCA 
    AGAAATCCAA GAGGTTCAGC TTCTTTAATG ATGGAATCAT CCTGGAAGAT 
    GGAAATGAAC ACATAAAGAG TGACATTGTA ATTCTAGCAA CAGGATTTAG 
    GGGAGATCAG AAACTTAGAG ACATCTTCAC AGCAAACTGG TGCAAAGAGA 
    AAGTGGCAGG GTCATCAGCT ACTGCGGTCC CTCTATACAG AGAATGCATC 
    CATCCTCGGA TTCCTCAGTT AGCAATTGTT GGATACTCTG AGAGCCTTAC 
    CAACATATAT GCCTCAGAAA GGATGGCCAA TTGGGTTACG CATTTCCTGG 
    GTGGTCGCTT CAAATTACCA AGCATAAGAT GTATGGAAGA GAGTGTAGCA 
    GAGTGGGCTA AATATAAGGA TCTTTACAAC GGAAAGTACT TTCGCAGGTC 
    CTGTATAAGC ACCGTTAACA TTTGGTTTAA CGATATCTTA TGCCAAGACA 
    TTGGATGCAA CCCTAAAAGG AAGAAAGGAG TACTGGCTGA ATGGTTCCAG 
    CCATATGGGC CTGCTGATTA TGCGAGTCTT TACTGACGAC TACCCTACAA 
    GTATATTCAT AGGAAAAGAA CACAAGTACT GCCTCCAGGA TCCTACTGAT 
    TGATTAGAAA GGTTTTATAT CTTTCAAGTT TGTTGTTATC ATAACAATAT 
    AAAATAGAAT CTACCATGTT CTTTACACAC TTCTACTTTC AGAGAGAGAG 
    AGAGAGAGAG AGAGAGAGAG TTAGTTCTCA ATTTATGTGA ATTTATGCTT 
    GTACTTCAGT TAATATCATG TAAATCTACC TAAAGTCCAA AACATTTGCA 
    AAAGCC

    Gene models with high sequence identity

    1. AT1G19250.1 [+] show detail - flavin-dependent monooxygenase 1
      E-value: 2e-100; Score: 363.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily FAD/NAD(P)-binding domain 1.6e-37
    superfamily FAD/NAD(P)-binding domain 0.0015
    HMMPanther DIMETHYLANILINE MONOOXYGENASE (FLAVIN-CONTAIN 2.7e-76
    HMMPanther DIMETHYLANILINE MONOOXYGENASE 2.7e-76
    HMMPIR Dimethylaniline monooxygenase, N-oxide-forming 1.6e-13
    HMMPfam Flavin-containing monooxygenase-like 4.2e-38
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.2e-05
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.2e-05
    Gene3D no description 3e-61

    See the detailed result >

    AT1G19250.1

    Model type
    Protein coding
    Short Description
    flavin-dependent monooxygenase 1
    Curator Summary
    FMO1 is required for full expression of TIR-NB-LRR
    Computational Description
    flavin-dependent monooxygenase 1 (FMO1); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: stem, leaf whorl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Dimethylaniline monooxygenase, N-oxide-forming (InterPro:IPR012143), Flavin-containing amine oxidase (InterPro:IPR001613), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G45180.1); Has 7639 Blast hits to 7432 proteins in 837 species: Archae - 6; Bacteria - 3396; Metazoa - 753; Fungi - 1311; Plants - 833; Viruses - 0; Other Eukaryotes - 1340 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR