K31151

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31151

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31151

Determination of introduced cDNA(s)

  • J013000H09 - Rice Full-length cDNAs - Original: J013000H09

    full reading [+] show sequence

    Nucleotide sequence: J013000H09 - full reading
    GCTTCCGATC TTCTTCTTCT TCCCCCAAAA ATCTAATTAA AATCCCCTCC 
    CCCAAAAACC CCTCTCACCC GAATTTCCTC ATGGACTCGG TGCCGGCCGC
    CGGAGTCGGC GTCGGCGGCG GCGGCGCGGG CGCGGGCTAC CCGGAGTCCA
    CGGAGTCATC CCCACGCAGC CGGGGCGGCG ACTCGTGGGA CGAGCCCTTC
    CCTTCCTCCG CCGCGGCGGC GGCCGCGGCT GCCGGGGGAG GGAGGCTCCG
    CCTCATGTGC AGCTTCGGCG GGCGGATCGT GCCGCGCCCC ACGGACAAGT
    CGCTGTGCTA CCTCGGCGGG GAGACCCGGA TCGTGGCCGT CGAGCGGAAC
    GCCTCGCTGG CCGACGTCCA CGCGCGGCTC TCCCGCTCGC TCCTCGGCGG
    CCAGCCGTTT ACTCTCAAGT ACCAGCTCCC CAACGAGGAC CTCGACTCGC
    TCATCTCGGT CTCCACCGAC GAGGACCTCG ATAACCTCGT CGACGAGTAC
    GACCGCATCG CCGCCACCTC CTCCGGCGGC GGCTCCTCCC GCACGTCGCG
    GATCCGCCTC TTCCTCTTCC CGGCCAAGCC CGAGTCATCC TCCTCCCTCG
    GCTCCCTCCT CGACGACTCC TCCAAGTCCG AGTCATGGTT CGTCGACGCC
    CTCAACAGCG CCATCTCCGG CTCCCTCGAC GGCATCCCGC GCGGGATCTC
    CACCGACTCC GCCTCAGTCA ACTGCCTCCT CGGCCTCGAG GACGACTCCT
    CCACGCACTC CCGCGGCGGC CCGCCTAACT CTTCTCCCGC CGAGGAACAG
    CGCGCCAACC AGCAGAAGCT CGCCGCGGCC GCGGCCGTTG CTGCGGCGAG
    GCACCCGCAC GACGTGCAGT CCGTGCCGGA CTCGCCGATG ATTGACAAGA
    ACTCCTCGTT CGGATCAACG TCCTCTGCGC CATCGCTGTC GAATCTACCG
    CCGATACGGG TGCGGCCCGA GGATCGCCCG CCGGATAGCC GACTCGCCCC
    GCAGGTTCCC GTTGAGGATC ACTTCGCCCA GATGGGGATC TCCGATCAGC
    CGGTGCAGCC TGTAATTGGG GGATACATGC AGCCGCCGCC ACAGGTGCCG
    ATCCCCAACA TGGCTGTCCC CAGCATCTCC CCCTCGGATG CGTCCAGCCG
    AGTGTTCTCC GACGATGACA AGTCCGATCA CGGCGGCGGC GGAGGTCGGA
    AGCCGCAGCC ACCCAAGCCG GAGGTTCCAC CTGTCGCTGA CCCCACCAAC
    AGAGCCATGT ACTACAACGA TAGATCGCCT CCTGCTGAAT TGAAGCGTGA
    CATGCCGGTT GGAACTGATG CTGCCAGCTA TCGTGTGCCT GTGCCAGCCC
    AAGATGCTGC TGCCGCCGCC GCCGCTGCGG CTGCTGCTGC CCAGCAACCC
    CCAGCTGGGT ATGTGTATGC ACAGATGCAT GCGCCGCCAC CGCAGCAGCA
    ACCCCCACCA CCACAGCAGC AACAGCCAGT CCCACAGCAA TATGTCACTG
    CACAAAATCA GCATTTCATT CACAATCCAG CTACTGGCAC ATTCATCCCA
    ATCCAATCCT ATTACCACCA TCCGGTCCCT CAGCAAGCAC CACAGCCGCC
    CATGCCGCAG CCTGTGCCAC AGCCACAACA ATCACACGCT TTCGACCCAA
    ATACTGGCAT GTATTACATT CCCATGCGCA CGAATGCGCC TCAGGCATAT
    AGCATGCCTC CTGGTGCCGC TGCTGTGCCG CCTCCCACCC TTGTTGACAC
    TACACCAAAA CCAACCGTGC CAATTCCTCA GATGGCCGTG AAGCAGCCTG
    AACTGCAGCA ACCTGGTTTG TACCGAACTA CCGCAGCACC TACCCCTGTA
    CCAGCGTCTA ATGCTCCTGC GTATGCTGGG ATGGGCTACC ACCGTGTTAT
    TCAAACACAC CATCATCCAG CGCCACAGCC TGCAGCGACT GTGGCAGGCA
    ATTTTGGATA TGACTATGGT GATCCCACGC GAGCACAGGT CTTCTACTCG
    CAGGCAGCGG CACCACCAAC ATTGCCACCT CAGTATCAGC CCATGGGCTC
    GCCCGATGCT GGCCAGGCTG ACCTGAAACA GGCCCGGGCT TCATAGCTCA
    AGGATTTGTG AACTCTGGTA TGTTGAGAAT CCTAGAAGTG TAGTTATCCT
    GCCGTTAATT ATCACTATTG TTATTACATG TTACATGAGT CAGTTGGCAA
    CCAGTGGATG GATGATGGCA TTAGGCAGCT GTGCATTTGG GATCAAAATA
    AGATGAAAAT GGGATGGTAG TTCTTGTGTT GGGTGAAACT CAAGAGGGTG
    TTTGTGATTG GTTCTGGAGA TGCCAATCGC CAATGCTGGA GCAAGTGGCG
    GGGAGTGGCT TCCAATTCCA ATTGCCGTCT TCTTATTTTT TAAAAAAATA
    AATATATAGT GTCTAAAGAA CTCGGTACAA ATTCTGAATC AAGAACTCAT
    CATTTGTGTA GCCCTTTGTA TATTTGAACC TGGAAGTTAT TGAGGTTGAA
    ATGTCAGATA AAAGTGTCAT TACTTTGCTT GTAGAAACTT CATTTGAGTT
    AAATATCATA TATATACATC ATTCCTGCC

    Gene models with high sequence identity

    1. AT2G01190.1 [+] show detail - Octicosapeptide/Phox/Bem1p family protein
      E-value: 3e-66; Score: 250.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Octicosapeptide/Phox/Bem1p 3.2e-31
    HMMPfam Octicosapeptide/Phox/Bem1p 0.0000000000000036

    See the detailed result >

    AT2G01190.1

    Model type
    Protein coding
    Short Description
    Octicosapeptide/Phox/Bem1p family protein
    Computational Description
    Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR