K31203

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31203

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31203

Determination of introduced cDNA(s)

  • J033069D17 - Rice Full-length cDNAs - Original: J033069D17

    full reading [+] show sequence

    Nucleotide sequence: J033069D17 - full reading 
    GAGGGTCCCA AACGCAAAAG ATCCCAAACC CCTAAATCAC CCGCTCCCCA 
    GTCCCCACCT CCTCCTCCTC CTCCTCTCGC TGGTGTCTCG GGTGGCGGCG 
    CGGCGCACCA CCTCGCGGCG AGATGGCGAG CTCGGCGCTG AGGCGATCCC 
    TCCGACGCCT CCTCCCTTCG AGCCCCCCTC CCCCGTCCCC CGCCTCCGCC 
    GCCGCCGCCG CGACCTTCCG CCGCTCCTTC CTGTCCGGTG GCGGTGACGG 
    GGTGGGAGAG AGCGTGGAAG AATTTGAGAA GAGGATGCTG AGTGGCTTGG 
    ATGATGGGCT TGAGAATCGC CGTGGAGGAT CTGACTGGGG TTGGAGGGGT 
    GGGTTCCGTA ACAGGGGTAA CTCTAGCAGC ATCTTGGCTG AATTGTGCAC 
    GGGCTTCGAT TCCTTAGAAG ATGGTTTGGA TGAGAAGTTG GATGAGGCGT 
    CCCGCACCTT TCATGTGACG GAGGAGTATG AGGACGATGA CTATGATTAC 
    AGGCCAGATG TGACTTTCAG GCGAGGCTGA ACTTATAATG TCAAGGATCT 
    TGACCTTACA AGACCTGCAG CCGCAAAGAA CCCTCCTAGG CCACAGTTTC 
    AAACAACTAC AGAGGAGGTT TTAAAGAAAG CCGATTTTAG GAATGTTAGA 
    TTTCTGGCCA ACTTTCTTAC AGAAGCTGGC ATTATAATCA AGAGGAGTCA 
    GACTCGTATA AGTGCGAAAG CTCAGCGTAA GGTTGCAAGA GAGATTAAAA 
    CCGCCCGTGC ATTGGGGCTA TTGCCTTTCA CAACAATGGG CCAAAGACCA 
    TTCATTTATG GCAGATCTGT GGAGGTGAAT CTTTCAGAGG AGGAATATGG 
    TTACGACTTT GTAGATCGGA GGGCAGGTGA GCCTGATGAG AATGCAGACG 
    ACGCTGTGCC TGATGAGGAC GTTGCGCCTG GTGTGGAGAA TGCATAAGCA 
    TTTTTCAAGG GCTTGCCATT CTGCAATGCT CTGCATTTCT TCTGTTACTC 
    ATTCGACACG GTTCCACATG CCTTCCTGCC TGATAGTCAT CTACTCTTGC 
    CCGGATCATA GCCCAGGTTC AATAAATTGT AGTATTTCGC ATGTTATGTA 
    CACTATAATC TCGGTTTCTG GTTTTGCTTG TTGTGACATG ATCAGCAAAA 
    TTTTTGGCTT GCTAGTCTCC AGGTTGGAGA TCATGTGCCC CACCTAACAT 
    TAACATGAAA ATGATCCAGA CGAGATCCAG TCCTTAATT

    Gene models with high sequence identity

    1. AT1G07210.1 [+] show detail - Ribosomal protein S18
      E-value: 2e-30; Score: 130.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S18 1.1e-17
    Gene3D Ribosomal protein S18 5.8e-16
    superfamily Ribosomal protein S18 2.4e-16
    FPrintScan Ribosomal protein S18 0.00000014
    FPrintScan Ribosomal protein S18 0.00000014
    FPrintScan Ribosomal protein S18 0.00000014
    BlastProDom Ribosomal protein S18 3e-21
    HMMTigr Ribosomal protein S18 0.0000000000065
    HMMPanther 30S RIBOSOMAL PROTEIN S18 2.3e-17
    HMMPanther Ribosomal protein S18 2.3e-17

    See the detailed result >

    AT1G07210.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S18
    Computational Description
    Ribosomal protein S18; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S18 (InterPro:IPR001648); Has 5527 Blast hits to 5527 proteins in 2078 species: Archae - 0; Bacteria - 4261; Metazoa - 44; Fungi - 19; Plants - 203; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR