K31207

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31207

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31207

Determination of introduced cDNA(s)

  • J013169B18 - Rice Full-length cDNAs - Original: J013169B18

    full reading [+] show sequence

    Nucleotide sequence: J013169B18 - full reading 
    GGTGTTCTCG CTACTCAGCC GTGCGCTCTG CGCCGCCTCC TCCTCGCCGG 
    CGGCGCCGCG GGGGAGATCT CTTCTCGCCG CGCTGCTCTC CCCGTCGGCT 
    AGCCCTCTCG ACCCATGCCG GGGCCCTGCT GCGCCGGAGC CACCGAGGCG 
    GCGGGCGTTC CATGGCTCGC CGAGCCCCCT GGGGTTCAGG TCCACACCGG 
    CGTCGTGGTC CAGCCCGGAG GCGGGGGCGG CCGTCGGTGG GGACGACGGG 
    CTGGAGGTCG CGAGCCTGGG GATCTCGCCG TGGATCGTGG AGAGGCTCGC 
    CGCACGGGGC ATCACCAGGC TCTTCCCCAT CCAGAGGGCT GTCCTTGATC 
    CAGCAATGCA AGGCAAAGAT ATGATTGGAC GTGCAAGAAC TGGAACTGGG 
    AAAACGTTGG CTTTTGGTAT TCCTATCATG GACAGGATTC TTCGTCACAA 
    TGAGAAGAAT GGGAGTGGTA GAAATCCTTT AGCCATAATT CTCGCACCTA 
    CTAGAGAACT TGCTAGACAA GTTGAGAAGG AATTTAAGGA ATCTGCTCCT 
    TTGGACTCTC TTTGTGTCTA TGGAGGTGTT CCCATCAGTC ATCAAATGAG 
    AGCTCTTAAT TATGGTGTTG ATGTTGTGGT TGGAACACCA GGTCGAATTA 
    TTGATCTTTT AAGAAGAGGT GTTTTAAACC TTTCTGAGAT CCAATTCGTG 
    GTTCTGGATG AAGCTGACCA GATGTTGGCT GTGGGTTTTG ATGAAGATGT 
    TGAGGTGATC ATGGAGAATT TGCCACAGAA CCGTCAAAGT ATGTTGTTCT 
    CTGCAACAAT GCCCAGTTGG ATTAGAAAAA TCACAAGCAA GTACTTGAAA 
    GATCCAATCA TTATTGACCT AGTTGGTGAT GAGGACCAGA AATTACCTGA 
    AGGAATCTCT CTTTATTCAA TTGCCTCTGA GCACTATGGG AAGCCATCAA 
    TTCTTGGTCC ATTGATCAAA GTGAGCACTC TTCTGAATGT ATGATGTGTT 
    TTATAGTTTG CACCGTTAAC GACTCTTTTC TCTACACTTC CACAGGAGCA 
    TGCTAATGGT GGAAAATGTA TTGTGTTTAC TCAAACTAAA CGAGAGGCAG 
    ATAGATTAGC ATATGCTATG GGCAGGAGCT ATGCATGTCA GGCGCTTCAT 
    GGGGATATTT CACAGAATCA GAGAGAAAGG ACACTATCAG GATTTCGAGA 
    TGGCCGCTTT AATATCCTAG TAGCAACCGA TGTTGCTGCT CGTGGATTAG 
    ACATACCCAA TGTTGATCTT GTTATACATT ACGAACTCCC AAACACCTCG 
    GAGTTATTTG TTCACAGATC TGGACGAACT GCACGAGCAG GGAAGAAAGG 
    AAGTGCAATT TTAATATACA CAAATGATCA AGCTAGAGCT GTAAGGATCA 
    TTGAGCAAGA TATAGGATGC AAATTCACAG AGCTTCCAAA GATTGAAGTT 
    GCAGATGAGG CCTCAGACAT GTTTAATGTT GTGAGAGACA ATCGCTCTAG 
    ATTAGCTGGA AGCCCAAGAA CCGGTGGCTC CTCTTTCGGA CGAGGAGGCT 
    ATGGTGGTTT TGGAGAAGGC CGTTCCCGGA GCTTTGGTGA TTTTGATGGC 
    TTTGGCAGTT CCCCTAATCG TGGTGGGAGA TCACGCGATG CTGGTTCAAG 
    ATATGGCAGT GGGTTTGGAG ATTTTAGACG ACCCTCCAAT GCCTTTGGCA 
    GGTCTAGTTC CAAGCAGCCT GATGGATTCG GATTTGGTGA CTTTGGAGAA 
    GGCAATTTCA GTAGAAATGG CAACAGACGC TCTAGGAGTT TTGATGATTC 
    AGGTTCGACA CGGTACAGCA GACGCCCTAA TGGTTTTGGA ACATCAGATT 
    TCGGCAGATC AGGCGGGTTC GATGATTCCA ACTGATCACA GGACTCCGGT 
    TTGTATAGTT TTGTGGTTTT TGACCTTCAA TCTTCTTTTC TATGTCATGA 
    ATGAGATCAC CAATCGCTTT TTCTGGCGCT TGGCCTAAGT AGTCTGTTGT 
    TGTAGCCAAA TAAGTAGCCT TGCTTGTGTA TTAGGTTTGT TCCAAAACAT 
    GTAATGTATA TACTCTAGCC TGTACCTTTT GGTTATGCAC TCTCTCAACA 
    AAGTGTAAGA AAATTCTGAA AATGAGGAAC CTTTCATTAT TTATGTCC

    Gene models with high sequence identity

    1. AT3G22330.1 [+] show detail - putative mitochondrial RNA helicase 2
      E-value: 2e-165; Score: 580.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DEAD-BOX PROTEIN 21, 50 4.3e-132
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 4.3e-132
    HMMPanther DEAD-BOX PROTEIN 21, 50 4e-80
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 4e-80
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 3.1e-48
    HMMPfam DNA/RNA helicase, C-terminal 2.8e-25
    superfamily P-loop containing nucleoside triphosphate hyd 7.1e-57
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-40
    Gene3D no description 2.5e-62
    Gene3D no description 9.2e-40
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 31.371
    ProfileScan RNA helicase, DEAD-box type, Q motif 8.938
    ProfileScan DNA/RNA helicase, C-terminal 23.226
    HMMSmart DEAD-like helicase, N-terminal 4.9e-57
    HMMSmart DNA/RNA helicase, C-terminal 3.4e-30

    See the detailed result >

    AT3G22330.1

    Model type
    Protein coding
    Short Description
    putative mitochondrial RNA helicase 2
    Curator Summary
    DEAD-box protein required for efficient group II intron splicing in mitochondria.
    Computational Description
    putative mitochondrial RNA helicase 2 (PMH2); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: response to cold, Group II intron splicing; LOCATED IN: mitochondrion, nucleolus, cell wall, protein complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3) (TAIR:AT5G26742.2); Has 113280 Blast hits to 72794 proteins in 3598 species: Archae - 1390; Bacteria - 52148; Metazoa - 22767; Fungi - 9352; Plants - 8202; Viruses - 661; Other Eukaryotes - 18760 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR