K31236

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31236

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31236

Determination of introduced cDNA(s)

  • J033115B13 - Rice Full-length cDNAs - Original: J033115B13

    full reading [+] show sequence

    Nucleotide sequence: J033115B13 - full reading 
    GATTACCAAC AGCCAAGCAA AGGGAGGCAA AGTTGCCAGC GTTGGGGATC 
    AGGCGTACGG TTTCTTCAAG GGGCCATGGC GGCTGCGGCG CCGAGTTCGG 
    TGGTAGCCGG ACTCGTGTCC GGGCTAGGGC TGGCGCGCTC CTCGTTAACG 
    CCCAGCGACG GCCGCTCTCC TTCCCTCTCG CCCCTGCATC CGCCATGGCC 
    CGCGGCCCCG CGGCTCGTCT GTAGGAGCAG CGGAGCCCGG CCCCCCAGGG 
    AGAGAGCCGT GGCCGCCGCC GCCGCCGCCG CAAATTCTCC GCGGCAGCAG 
    CAGCAGCTAG GAGAGCATGA GCATGAGGAG GCTGTGGCAG CGGCGGCCAT 
    GGAGCCGGAG AGGAGCAGTC CCCATGAGGT GAGGGAGGAG ATAGCGAGGT 
    GCTTCGATCT CGTGCGCCGC CTCGGCCGTG GCGCCGTCTA CCTCGGCTCC 
    TCCAGGGTGC CGCCCACCCA TCCCCATTAC CTCCATGCCG CCGAGCTCTC 
    AAGGGAGATA GCTAGGCTGC TGGACTGCAC CACATGGTCC GGAGCTGGTC 
    CAGGTTTCAT GGATGCTGCC ACCCAAGGCG CTCTTGAGGC GGGCAAACCG 
    GTCGGTGGCT TCAAGATTGG CAAGGAGGCG GGTGAATGGA CAACCTCCAA 
    TTTTCATCCT TACCTGCCAT CAGAGTCATA TCTCACCTGC AGGTTCTTCT 
    CTGCAAGGAA GCATGGGTTA GTTGATGCCG CGGTGCGGAA CTGCCCTACC 
    GATAGAACTG CCATCATTGC ATTACCTGGT GGGATAGGGA CGCTGGATGA 
    GCTTTTCGAG ATGATGGCGC TAATTCAACT GGAGCGGATC GGTTCCACGC 
    TTCCAGTCCC ATTCTTGCTC CTCAATTATG ATTCTTACTA CTCCAAACTA 
    TTGGACTTTC TGAATGACTG CGAGGAGTGG GGAACCGTTG CTCCGGGAGA 
    AGTAGCATCT CTTTGGAAGG TTTGCAATGG GAATCATGAA GCTTTGGAGT 
    ACCTGGCACA GTTCTACAAT GTACCTCTTG CTGAAAGAAA TTACTGCATA 
    TCACCACAGT TGAAGCAGCA GGCAACTTCA TAGGCCACAA GTTGACGATT 
    CAGGTTTTTC TCAAGAAATC TTGGAGCAAA CTTATTCCGT TTAGTTGATC 
    ATTGTAGTAC CCCCTACCAT TTTAAATTGA ATTAGCAAAC GTCAAATACA 
    AAAAACAGAG GGAGTACAAC CTTTTCACCC CAGTTCTTGA AATAAACTTG 
    TACAGTTGAA TTTCAGTCTG AATATCTGAT GAACATCAAG GATGATGCAA 
    TCAAAGTTTC AGTTACTCAG TGAATTC

    Gene models with high sequence identity

    1. AT1G50575.1 [+] show detail - Putative lysine decarboxylase family protein
      E-value: 1e-96; Score: 350.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Putative lysine decarboxylase 6.7e-30
    Gene3D no description 1e-20
    HMMPfam Conserved hypothetical protein CHP00730 7e-24

    See the detailed result >

    AT1G50575.1

    Model type
    Protein coding
    Short Description
    Putative lysine decarboxylase family protein
    Computational Description
    Putative lysine decarboxylase family protein; FUNCTIONS IN: carboxy-lyase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); Has 3310 Blast hits to 3310 proteins in 987 species: Archae - 6; Bacteria - 2367; Metazoa - 4; Fungi - 47; Plants - 208; Viruses - 0; Other Eukaryotes - 678 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR