K31237

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31237

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31237

Determination of introduced cDNA(s)

J033060G13 - Rice Full-length cDNAs - Original: J033060G13

full reading [+] show sequence

GTGTTTCCAC TTTCTTCCAA AGCCGAAAAA TCGAGAGAGA AAGAGCAAAA 
CCCTAACGGC GGCGCTCCGC CCCCTTCCGC CGCCGGATTC CTCCTCCTCC 
TTCGTCCGCC TTCGCCGGCG CCGCCCTGCT CCGAAGGAGC CCAGGCCTTG 
TCGCCGCGTC GCTTGCCCCG CCGCCGGTTT CAGCAGCAGC CACCCCCACC 
ACCATGTCTT CTCAGGTCGA CAACCGTAGC CAATCTGCTG GAAAGCGTGC 
CCGCACCGAC GGTGGGCGGC GTGAGGACGA CTGGGTTTGC CCCAGCTGCC 
AGAACGTCAA CTTCGCCTTC CGCACCACCT GCAACATGCG CAATTGCAAC 
CAATCCAGGC CCACCGACTA TACGAAGGAT ATGCAGAAAC CTATGCAGAC 
ACCGCCGCCC CATTTCCCCA TGTCAGGGGG ATACATGAGC CCAGGGACGC 
CGCCATCCAT GTACCTCGGG GGTGGTGCTC CCCCTTATGG CACCTCCCTC 
TATGGCGGAC CTGCTTTACC ACGTTATGGT ATTGCTCAGT TCCCTGGGGG 
TTCTGGATAT CCATATGGCT ATGGTGGCCG CCTGCCAATG GGGAGCCCCT 
ATGGGCCGCC GATGCATATG GCAGGGCCTC CATATTCTGC TGGATCCATG 
ATGGGACCAG GTGGAATGTA TGGGATGCCC ATGGACAGAT ATAGCTTGGG 
CTTACCTGCT GGTCCTGGTC CAATGGGCGC GAGGGCTGGT TCATATTCCG 
AGGAAGGATC CCAGAAGAAG CCTGCAGGAG CTGGGCGTGA TAATGATTGG 
AAATGCCCTA ATTGCAACAA CATTAACTTT GCATTCCGGA CAGTCTGTAA 
CATGAGAAAG TGCAATACAC CAAGACCTGA AAACCAGGGG TCCAAACCTG 
ATGGTGCAAG AGGTCCAAAA CCAAAGATGC CAGAAGGTAG TTGGAAGTGC 
GAGAAGTGCA ATAACATAAA CTATCCATTC CGCACAAAAT GTAACCGTCC 
AAGTTGCGAG GCTGAAAAGC CATTTCAGAC AAACAATGCT AATGAGTCAT 
CTGCTGATCA GGACAATCAG TTGTTGTCAT GTAATATTGT GAAGCTTTTA 
TCAAAGCTGC AACTTTCACA TGACTTTCGA GACAATAATG AGCAAACAAA 
GGTGGATCCT CCCGGTGGCC CTGCTGGAGT ACCGACAAGT TCGCACGCCC 
TGCGAATGGC AGCTCTCAGT GAGTTGCAGA ACAGTGTTAA GAGCTGATAC 
CCTTTTCATT TTCCAAACAA GGTGAGAACT TTAATCCATG TGGATGTGCT 
TCTATCAGGA GCAGCTGACA GTATTGCATG CAGTGATCTT GCTAAGGAAG 
TTGGAGATGG GAAACATCGT GTGATGGCCA GCCTTGATGT AAGAATGCAA 
ATCAGTCTTA CTCCGTACCA TATCTGTGTG GAGTGTGCAC ACCGGAAGCA 
TAGTCATTTT TTGAATGGTC GATTGCTTCT TCCACAGTAA AGTCTATAAT 
ACCAGTGTGC AGGTGTTTTT TTCCCTTTCT TTCAGTGTGA AGGTGTTTTT 
TTACCCCTTT CTTTCGTTCA TTCATTCTTT TTCTTTTTCC TTGTTGAGAC 
GGTATCCTGG AGCACTTTGT AATACTCTAA TGTGCTTCGG AAAGTAGAAT 
ATAAGTTGTG CTTATGGGCG GGCCAAAATG CTTTGGCCGT TAGTTGCATG 
ACAGCCTTTC CAACATGCTG CTGCCTAGCC GTAGTTCTCC CAAAAATGAA 
ACCATCTTGA GATCCGTTTG CGGTTGAACT GAAATTAGAC GGTATCTCTG 
GTTTCAACAT CATCCTTTAA ACCCTGGATG AAAGATTTGC AATATTCCTG 
CGG

Gene models with high sequence identity

AT1G67325.1 [+] show detail - Ran BP2/NZF zinc finger-like superfamily protein
E-value: 1e-67; Score: 254.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc finger, RanBP2-type	1e-05
HMMPfam	Zinc finger, RanBP2-type	2.7e-06
HMMPanther	ZINC FINGER PROTEIN	8.4e-55
HMMPanther	ZINC FINGER PROTEIN	8.4e-55
HMMSmart	Zinc finger, RanBP2-type	0.038
HMMSmart	Zinc finger, RanBP2-type	0.0011
HMMSmart	Zinc finger, RanBP2-type	0.0014
superfamily	Znf265, first zinc-finger domain	4.9e-08
superfamily	Znf265, first zinc-finger domain	5.4e-08
superfamily	Znf265, first zinc-finger domain	2.6e-06

See the detailed result >

AT1G67325.1

Model type: Protein coding
Short Description: Ran BP2/NZF zinc finger-like superfamily protein
Computational Description: Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR