K31311

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31311

Determination of introduced cDNA(s)

J023012N17 - Rice Full-length cDNAs - Original: J023012N17

full reading [+] show sequence

GCAAATTAAA GAAAGCATAC TAAGCTTAGT GTGTGTTGAA TCGGCGACGA 
AGATGTCGTC GTCGGCGACG GTCCACTACC GCGCCGACGG CAGCGTGGAG 
ACGGCGGCGG TGGAGCCGCT GTACCCGATG GCGACGGTGG TGTACTTCCA 
GTGCGTGTTC GCCGCCATCA CCCTCATCCT CGTCGCCGGC TCCCTCCTCG 
GCCGCATGAG CTTCCTCGCC TGGATGATCT TCGTCCCGCT CTGGCTCACC 
TTCTCCTACA CCGTCGGCGC CTTCTCCCTC TGGGGCGGCG GCTTCCTCTT 
CCACTGGGGC GTCATCGACT ACTGCGGCGG CTACGTCATC CACGTCTCCG 
CCGGCATCGC CGGCTTCACC GCCGCCTACT GGGTGGGGCC AAGGGCACAG 
AAGGACAGGG AGAGGTTCCC GCCGAACAAC ATACTGTTCA CGCTGACGGG 
GGCAGGGTTA CTATGGATGG GGTGGGCAGG GTTCAACGGC GGTGGTCCGT 
ACGCCGCCAA CTCCGTCGCC TCCATGGCCG TCCTCAACAC CAACATCTGC 
ACCGCCATGA GCCTCATCGT CTGGACATGC CTCGACGTCA TCTTCTTCAA 
GAAGCCCTCC GTCGTCGGCG CCGTCCAGGG CATGATCACC GGCCTCGTCT 
GCATCACCCC CGCTGCAGGG GTGGTGCAGG GGTGGGCGGC GCTGGTGATG 
GGGGTGCTCG CCGGCAGCAT CCCGTGGTAC ACCATGATGA TCCTCCACAA 
GCGCTCCAAG ATCCTGCAGC GCGTCGACGA CACCCTCGGC GTCTTCCACA 
CCCACGGCGT CGCCGGCCTC CTCGGCGGCC TCCTCACCGG CCTCTTCGCC 
GAGCCCACCC TCTGCAACCT CTTCCTCCCC GTCGCCGACT CCCGGGGCGC 
CTTCTACGGC GGCGCCGGCG GCGCCCAGTT CGGCAAGCAG ATCGCCGGTG 
GCCTCTTCGT CGTCGCCTGG AACGTCGCCG TCACCTCCCT CATCTGCCTC 
GCCATCAACC TCCTCGTCCC GCTCCGCATG CCCGACGACA AGCTCGAGGT 
CGGCGACGAC GCCGTCCACG GCGAGGAGGC CTACGCGCTC TGGGGCGACG 
GCGAGATGTA CGACGTCACC AAGCACGGCT CCGACGCCGC CGTTGCGCCC 
GTCGTCGTAT GATCGATGAC ATTGCATGTG CTGTCACCTG ATGAAAACCT 
CAAGAAATTC ATACACACAG AAATTAATAC TACGTGTTTG CTTCTACTCG 
TTAATTATGA AAATCTATGT TCAAGTTTTA CGTGTATTTA ACAGCGCGCG 
TGTGGAGTTT TTAGGTATTG CACTTTGCAG ATTCAGGGGA GTCCGGTTCT 
GTATTTTTGT TAGTTTGTAA AAATACATAC GTAGTTTTGT ATCCTTACTT 
GATCTGAATG AACACAAGTG TAATATTGTA TTTTGTTAAT T

Gene models with high sequence identity

AT2G38290.1 [+] show detail - ammonium transporter 2
E-value: 1e-126; Score: 450.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Ammonium transporter	3.7e-73
superfamily	Ammonium transporter	1.2e-81
FPrintScan	Blood group Rhesus C/E/D polypeptide	7.3e-09
FPrintScan	Blood group Rhesus C/E/D polypeptide	7.3e-09
FPrintScan	Blood group Rhesus C/E/D polypeptide	7.3e-09
FPrintScan	Blood group Rhesus C/E/D polypeptide	7.3e-09
FPrintScan	Blood group Rhesus C/E/D polypeptide	7.3e-09
HMMPanther	AMMONIUM TRANSPORTER 2	5.9e-207
HMMPanther	Ammonium transporter	5.9e-207

See the detailed result >

AT2G38290.1

Model type: Protein coding
Short Description: ammonium transporter 2
Curator Summary: encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.
Computational Description: ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;1 (TAIR:AT4G13510.1); Has 10296 Blast hits to 10279 proteins in 2052 species: Archae - 227; Bacteria - 4609; Metazoa - 555; Fungi - 427; Plants - 543; Viruses - 0; Other Eukaryotes - 3935 (source: NCBI BLink).
Link: InterPro Scan - TAIR