K31328

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31328

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31328

Determination of introduced cDNA(s)

J023121E24 - Rice Full-length cDNAs - Original: J023121E24

full reading [+] show sequence

GGGATCCAGC CGCAGAAGCA AAACCCAGGA GCAGCCATGG ATCCCCTCGC 
CGTGCTCCGG GACTACGCCG CCCGCGGCGA CCTCGACAAG ATCATCTTCT 
CCGGCGACGA GGTGCTCTTC GGGTCGGAGT ACACCTTCCC GGCCAACGCC 
CCCACCGCCT TCACCAACAA GCAGTCGGGC CGCCCCTACC CGCTCTCCGC 
CGCCGTCTTC CTCGCGCAGC ACAACGACCT CAAGCACACC GACTTCATCC 
AGGCCGCCCG CCTCCGCCGC ATCCCCCCCG TCTCCCTCCC CGACCGTAAG 
ACCTTCCTCG ACTTCCTCCG CCATGGCCAC CACTCGCTCC CCACCGACCC 
ATTGCTCCCC TCCGCGCTCC CGTCCTTCGC GCCGGAGCCC CAGCCGGCGA 
TGCCCGAGGA GCCCGAGGGC GACAAGGCCT CCGGCGCCTA CATCCGCGCC 
CTCGAGCGGA CGCTCAAGGA CAGGAACGCG CTCCTCGACG CCCGCGGCCG 
CGACTTCCTC GCCGTGCTGC AGAACGCTAC GCGCCGGGAG GAGGAGCGCC 
GGCGGAACAA GGACAGCGCC CCCTCCTCCG CCCGCCACGA GCCCTCCTCC 
GCCGCCGCCG CGGCCGCCAT GGCGAAGCCC AAGGTGGAGA GGTCCTTCGG 
GGACGGGTTC GTGCCCATCA TCCTCGTGCC GAGCGCGTCG CAGACGCTGA 
TTACGATCTA CAACGTGAGG GAGTTCTTGG AGGACGGTGT GTTCGTGCCG 
AGCGACGAGA GGATGCGCGC GATGAAGGGG AGCGGGAAGC CCGAGTGCGT 
CATGGTGCAG AAGAAGCTGA TTCGTGGGGA GAGGGCCGGT GCTGGTGGTG 
GCGCGACAAC GTTCGAGGTG AGGGACAAGC CGGCTTCGCT TAAGGCAGAC 
GATTGGGCGC GGGTGGTGGC CGTGTTTGTG CTCGGCAAGG AGTGGCAGTT 
CAAAGACTGG CCATTCAAAG ATCATGTTGA GATCTTCAAT AAGGTTATTG 
GTTTCTATGT GCGCTTTGAA GATGATAGTG TGGAGGCAGC CAAAGTGGTC 
AAACAGTGGA ATGTTAAAAT CATATCTATA AGCAAGAATA AAAGGCATCA 
AGACAGAACA GCAGCCCTTG AGGTATGGGA GCGGCTAGAG GAATTTATGC 
GGGCACACAC ATAGTTGAAG TATCATGTAC ACCAGAACGG CAGGATCATG 
TAAGCGGTCT ATCTTATTTT TATTTGAAAA GAAGATCCTG AGTTCTTTGG 
AGTTCTGTAA TGTTGGACAT AATGGTTTCC TACTCCATGT TCTAGTACTG 
CTGCCTTCGT GTATCATGAA TGGTTTACTA ATCCCTATGG AGTATGGATT 
GACCAATCAT AGATAATTTG TGATCTAATC TGAATTGCAC TGTAGCTAGT 
GATTAGTCAG CTCTGCATAT AACTGATCCT CACAAAGAAC ATGCATGATG 
TTTGTGACTG TCAAGGCTAT CATGCTAATT CTGTG

Gene models with high sequence identity

AT3G22590.1 [+] show detail - PLANT HOMOLOGOUS TO PARAFIBROMIN
E-value: 2e-86; Score: 317.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	RNA polymerase II accessory factor, Cdc73	1.4e-68
HMMPanther	gb def: Arabidopsis thaliana genomic DNA, chr	5.8e-116
HMMPanther	RNA polymerase II accessory factor, Cdc73	5.8e-116

See the detailed result >

AT3G22590.1

Model type: Protein coding
Short Description: PLANT HOMOLOGOUS TO PARAFIBROMIN
Curator Summary: Encodes PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP), a homolog of human Paf1 Complex (Paf1C) subunit Parafibromin. Human Parafibromin assists in mediating output from the Wnt signaling pathway, and dysfunction of the encoding gene HRPT2 conditions specific cancer-related disease phenotypes. PHP resides in a ~670-kDa protein complex in nuclear extracts, and physically interacts with other known Paf1C-related proteins in vivo. Loss of PHP specifically conditioned accelerated phase transition from vegetative growth to flowering and resulted in misregulation of a very limited subset of genes that included the flowering repressor FLOWERING LOCUS C (FLC).
Computational Description: PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP); CONTAINS InterPro DOMAIN/s: RNA polymerase II accessory factor, Cdc73 (InterPro:IPR007852); Has 502 Blast hits to 395 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 127; Plants - 42; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link: InterPro Scan - TAIR