K31331

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31331

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31331

Determination of introduced cDNA(s)

  • J023027H14 - Rice Full-length cDNAs - Original: J023027H14

    full reading [+] show sequence

    Nucleotide sequence: J023027H14 - full reading 
    GATTCAGACA TGGCGCACCA GAGGCAGAGA GACACGAGCA GCGAGGAGGA 
    GCTCCCACGT GAGCCGTGGA CGGTGGAGAA GGACGTCCAC CTCCTCAACA 
    ACTTAGCCGC GCATGGCGGC GAGTTCCAAC GCGAGCCGTG GGTGGAGAAG 
    GACGACGCCG CGTCGTGGAC GGTGGAGAAA GACGACGTCC CGCTCGTCAA 
    CAACATCGTC GCGCACGGCG ATCCCGAGGG CAGTTCGAAC TCGCTCGCCC 
    GATCAGGAGG ACATTTGGCC AATGTCCACG AGGGAGCCGG CATGTTTTAT 
    CAGCCCAACT TCAAGTACAT TTTCTGTGAT ATGGATGGCA CACTGCTGGA 
    TAGTAGCGGT CTAGTTCCAG AAACCAACGC TGAGGCCATT AGGGTGGCCA 
    GGTCAAGAGG GGTACAAACA ATCATTGCGA CAGGAAAGTC CCGCCCTGCT 
    GTTATTGAAG TTCTTGGCAA GGTTAATTTA GCTGGCACAG GTGGTATCGT 
    TTCAGAATCG TCTCCAGGAG TATTTCTTCA GGGTTTGTTA GTTTACGGCG 
    AGGGGGGCCA AAAGTTATAT CAACAGAATT TAGATATAGA AGTGTGCAGA 
    GAGGCGCTTC TATACTCTCT GAAGCACAGA GTTGCCCTGG TGGCCTTCAG 
    CCAGGACGAC TGCTACACAA CGCTTGATGA TCATCCTCTG GTGGACTTTT 
    TCCATGTTAT GTACCACGAA CCAAAGGCAA AGATAATATC AGATGTTGAC 
    CATTTTCTGA GTACCATTGA CATACAGAAG TTTGTGTTCC TAGAAACTCC 
    TGAAGTGATC TCTTCTGTGC TGAGGCCACA CTGGGCGAGG AGGGTTGATG 
    GAAAGGCACA GGTCGTTCAG GCACAGGGTG ATGTGCTTGA AGTTGTACCG 
    CTCGGGACTT CCAAAGGAAA TGGGGTAAAA ATTCTGTTGG AATCACTTTG 
    TGCTAGTCCA GATGAGGTCA TGGCACTAGG CGATGGAAAA AACGATAAAG 
    AGATGCTCCA ACTTGCCGGC CTTGGTGTCG CCCTCTGCAA CGGCTGTGAG 
    GTGACAAAGG TGGTAGCCGA CGTCATCGGC GCGAGCAACG ACGAAAGCGG 
    CGTGGCACAG GCCATTTACA AATACCTCTA GAAAATGATT CCACCTAGCT 
    GGCTTAGCAT TTCTACTGTG GTGTGGTAGG GCCTAATATA TCTTGCTTGC 
    AGCATCCATT TGCAAGCGTA CCATATTTAA ACTTCAATAA TTGTACGTGG 
    AAGTTGGAAG TACTATTCGC TGGTGGATTA ATATCATATT TGCTGCTTAC 
    AGCT

    Gene models with high sequence identity

    1. AT2G25870.1 [+] show detail - haloacid dehalogenase-like hydrolase family protein
      E-value: 4e-97; Score: 352.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.2e-36
    HMMTigr Cof protein 3.9e-44
    HMMTigr HAD-superfamily hydrolase, subfamily IIB 2.6e-15
    HMMPanther CATION-TRANSPORTING ATPASE 0.00041
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0.00041
    HMMPfam HAD superfamily hydrolase-like, type 3 6.2e-49
    PatternScan Cof protein 0
    superfamily HAD-like 4.7e-53

    See the detailed result >

    AT2G25870.1

    Model type
    Protein coding
    Short Description
    haloacid dehalogenase-like hydrolase family protein
    Computational Description
    haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR