K31420

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31420

Determination of introduced cDNA(s)

J013002A13 - Rice Full-length cDNAs - Original: J013002A13

full reading [+] show sequence

GATCTTTTTT CCCCTCTCGC CTCCTGGCGA TTGGGTTCGG CGTTCTCCTC 
ATCTCTTGTT GATTCTTGCG TTGTTTTTTG GGGCCAAATT TGTTGGTCTG 
ATTTGTTCTT GAAGAAGTCG GCATGCCTCC GTTCCACGAT TACAGAGATG 
GTGGTGTTCT TGTGATGGAG CCGGCGGCGT CGGCGGCTCT GTTCGGCGGC 
GTCAGGTCGC GGAAGCGGGC GCGGGTCACC GCCGTGCCGC CCTGCGGCTT 
CGTCTCCGCC GCCGCGGAGG CGGTGGAGGT GGTGGAGGAG GAGGGGTTGA 
CGGCGGCCAA GAGGCAGAAG CAGCAGCAGC AGCAGCGGGA GGCGCCGTCG 
CTCGACGCTC TCCCCGACGA GTGCCTCTTC GAGATCCTCC GCCGCGTGAA 
GGGCGCCCGC GCCCGGTGCG CCTCCGCGGC CGTCTCCCGC CGCTGGCTCG 
CTCTCCTCGG CGGCATCCGC TCGTCGGAGA TCAAGCGAGA GCCGGCGGCG 
GCGGCGGTGC CGGACCTCAA CCAGGTGTTC GTCGACGAGG ACGAGGAGGA 
GGAGGACGAG TTCGAGGTCC CCCTTGGCGG CGGCTGCTCC TCCGAGAGGT 
GCCTCGAGGG GCGCGAGGCC ACGGACGTCG GCCTCATGGC GGTGGCCGTC 
GCCGACGCGC TCCGGGGAAG CCTCGAGAGC CTCGTCATCC GTGGGAGCCA 
CCCGACGCGC GGCGTCACCG ACGCCGGCAT CTCGGCCGCC GCGCGCGGCT 
GCCCGTCGCT CCTCTCGCTC GCCCTGTGGC ATGTCCCTCA GGGTTGCCCG 
GACTTGAAGG TGGTGACCGT CGAGGCATGC CCCGGTGTTG CTGACGAGGG 
CCTCAAGGCG ATTGGCCGGT GCTGCGCGAA GCTGCAGTCG GTGAACATCA 
AGAATTGCGC GCATGTCGGT GACCAGGGTG TCTCCGGCCT TGTCTGCTCC 
GCGGCCGCAT CGCTTGCCAA GGTTCGCCTC CAGGGATTGA GCATCACCGA 
TGCTTCTCTT TCGGTGATTG GGTACTACGG GAAGGCGATC ACCGATCTCA 
CCCTCGCTCG CCTTCCCGCG GTTGGCGAGA GGGGTTTTTG GGTGATGGCC 
AACGCCCTTG GCCTGCAGAA GCTCAGGTTC ATGAGTGTCA GCTCCTGCCC 
GGGAGTCACT GATCTTGCGC TCGCATCGAT TGCCAAGTTC TGCCCGAGCT 
TGAAGCAGCT CAACCTCAAG AAATGCGGTC AGGTCTCGGA TGGCCGTCTC 
AAGGATTTCG CGGAATCGGC AAAGGTCTTG GAGAGTTTGC AGATTGAGGA 
ATGCAACAAG GTTACTCTCA TGGGCATTCT GGCCTTCCTC CTCAACTGCA 
GCCCGAAGTT TAAGGCCCTC TCACTGGTCA AGTGCAACGG GATCAAGGAC 
ATCTGCTCTG CTCCCGCGCA GCTTCCCCTG TGCAAGTCTC TCCGATCCCT 
CACCATCAAG GATTGCCCAG GTTTCACCGA TGCCAGCTTG GCCGTGGTCG 
GCATGATCTG CCCTCAGTTG GAGAATGTCG ACTTGAGTGG TCTCGGTGCA 
GTTACAGACA ACGGGCTCCT TCCATTGATC AAGAGTTCCG AAAGTGGGCT 
GGTCCATGTC GACTTGAACG GCTGCGAGAA TCTCACAGAT GCTACTGTTT 
CTGCCTTGGT GAAGGCACAT GGTAGTTCGC TTGCACGCCT CAGTCTCGAA 
GGTTGCAGCA GGATCACTGA TGCAAGCCTG TTTGCCATTT CTGAGGGCTG 
TACCGATCTC GCCGAACTTG ATCTCTCAAA CTGCATGGTC AGCGACTACG 
GTGTTGCAGT GTTGGCGTCA GCGAGGCAGC TCAAACTTCG TGTCCTCTCA 
CTTTCTGGTT GTTTGAAGGT TACCCAGAAG AGTGTTCCTT TCTTAGGCAG 
CATGTCGGCA TCGTTGGAGG GCCTCAATCT CCAGTTCAAC TTCATTGGCA 
ACCACAACAT TGCATCGCTG GAGAAGCAGC TCTGGTGGTG CGACATCCTT 
GCTTAGAGGA ACAACAACTA GTTGCTGGAG GTGCTGGGTC ATCCATCTCC 
AGATGCAAAT ATACGACCGT AGCGGTAGTA CTCCTACTTC AGTCAAGCTT 
CGCAGCAGCA GAGTTGGTTT CTTGGGTCCT GTCTTTGAGT CATGGTGGAC 
TTCCTTCGTC TTAGAGCCGG TTGTTTTCCG GGGGGCATTT TTAGCCGAGT 
GCTCGTTTTT TGCAGGTATC CTCTTGGGAT AGTGCCTGTT CCTTGAGCCT 
TCGGCTGCCA TTAGCGTGGC ACCCCTGCCC CTCTATCCCA ACCTTGGTCC 
TTGTTGATTA CAGTCATTAC ATCATGCTGT TTTTTTTCCA TTGCGTCGTG 
TTCGGAGCTC AAATATTGTC AAAGCGTGTT CTTCTTTTCC GGTAATTCTT 
GTTAGTCGCG GACATCAACA CCGTTCGTAG AAACTTGGCT GCTCCAGTTC 
TTCAGTGTCC AGGTGTTCGC GATCTCTTCG GGTGCGTATG TTTGTTCCAG 
TTCAGGTCTT GTGCGGCTTG CGGTATCGTG GGTAGTGTGT GTGTGTGTGT 
GTGTGTGTGT GTGTGTGTGT GTGTTTGTGT TTGCAATGGG GGTTGCTTCT 
TATGGTGTTT GTAGGGGTCT CCTGATATTA TCCTTGGGGA TCCGGCCTTT 
GCAAGGTGCA TTCTGAAGGG CCTTGCCATT GACAACCCTG TGTGGTTGTT 
TTTCTACTCC GGATCCCTGG TTTTGCTGGC AGATTGTTGA ATGCTGTAAT 
CTTTGTAACC TTCCCAGATT AAATAAAATG TGGTGTTTCA GTT

Gene models with high sequence identity

AT2G25490.1 [+] show detail - EIN3-binding F box protein 1
E-value: 6e-128; Score: 455.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	GRR1, PLANT	9e-118
HMMPanther	F-BOX/LEUCINE RICH REPEAT PROTEIN	9e-118
superfamily	RNI-like	1.1e-34
superfamily	F-box domain, Skp2-like	0.00000093
superfamily	RNI-like	0.0000021
Gene3D	no description	4.4e-16
Gene3D	no description	9.5e-17
Gene3D	no description	4e-32
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	15
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	0.58
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	4.2
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	3.4
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	540
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	4.7
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	0.013
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	2.5
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	0.0017
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	4

See the detailed result >

AT2G25490.1

Model type: Protein coding
Short Description: EIN3-binding F box protein 1
Curator Summary: Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3.
Computational Description: EIN3-binding F box protein 1 (EBF1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 13069 Blast hits to 4728 proteins in 296 species: Archae - 0; Bacteria - 528; Metazoa - 5097; Fungi - 1628; Plants - 4199; Viruses - 9; Other Eukaryotes - 1608 (source: NCBI BLink).
Link: InterPro Scan - TAIR