K31427

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31427

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31427

Determination of introduced cDNA(s)

  • J033073M17 - Rice Full-length cDNAs - Original: J033073M17

    full reading [+] show sequence

    Nucleotide sequence: J033073M17 - full reading 
    GGGCTTCTCT CTCTCTCTCT CTCGGTCTCC CACCTCCTCA TCCCGCTCGC 
    CCGCTCGCCG ACACGGCGCA AATCCAAGAA CCCCCCACGC CGTGCGTGGA 
    CACCTCGCCT CGCCTCGTCC TCGCCCATCT CTCTCCTTTT GCCCGCATCC 
    GCGGCCTCGC CTCGTAGTCC CCGCCGCATC TCGCCATTCC GCTACGCGCC 
    CAAGCTACTG CTAGTAGTAC TATCTGCTCC CCCGTGCGTG GTCGGGTCAG 
    GTGGGTCGGC CGCGAGATCC CGCCATGGAG GTCAGGACAG TAAAAGTTAG 
    CAACATTTCA TTGAATGCTT CAAAAAGGGA GATCACAGAG TTCTTCTCTT 
    TCTCTGGAGA TATAGAATAT GTTGAGATGC AAAGTGAATC TGAAAGGTCA 
    CAGCTTGCTT ATGTTACATT TAAGGACTCA CAAGGAGCAG ATACTGCTGT 
    GCTTCTCTCA GGGGCAACAA TTGTTGACCG TTCTGTCGTC ATAACTCCAG 
    TTGTGAACTA TCAACTGCCT CCTGATGCAC GCAAACAATC CGCAGGAGAG 
    AAATCTTCCT CTGCTGAATC TGTAGTCAGG AAGGCAGAGG ATGTTGTGAG 
    CAGCATGTTG GCAAAGGGCT TTGTCCTCAG CAAGGATGCT CTGAACGTAG 
    CAAGATCTTT TGACGAGCGT CACAACATAC TGTCCAATGC TACAGCTACT 
    GTCGCATCTC TAGACCGCCA GTATGGCGTG AGTGAAAAGA TCAGTTTGGG 
    CCGTGCAATT GTTGGTAGCA AGGTCAAGGA GGTGGATGAT CGTTATCAGG 
    TGTCAGAACT CACAAAGTCC GCTTTAGCGG CTGCGGAGCA GAAAGCCAGC 
    ATTGCAAGCT CTGCTATCAT GAATAACCAG TATGTCTCAG CTGGTGCTTC 
    CTGGTTAACA AGCGCATTTG GCATGGTAAC CAAGGCGGCA GGTGACATGA 
    GCTCCATGAC CAAAGATAAG GTAGACAGGG CCGAAGAGGA GAGGAAAGCG 
    ATCATGTGGG AAGAGAGGAA TGGGCTTGTA AGTGATTATG CCAAGATCCA 
    TCTTGATGAA CCCTCTTCAT GGGAGCCTGC AGTTCTTCCG TTGGAATCTG 
    TGGATGAGCA GAAGCTCCAG GCTGTGTGAT CTGCACAATC CAATGGTGGT 
    CGTTTCTCTG CACGTCATTC TTTTGTTCAT GTCCAATATA GAAGATTGTT 
    TTTCACCGCT GCACGGTAGC AAAAATATTG AGCTTATTGC CTATAGTATG 
    ATGTAAATTT TAGAAATTCC CCATGTGTTT TCTTCCAGCT TTGTTATAGA 
    CCACTGAAAG GCTTACTTGT TCAGTGTTAG ACATGGAAAT GAAAGTTGTT 
    CCAGACTTCC AGGCATACCT CTTGTTATGG TAGAACATGT TTCTGTGAGT 
    TATCTCAGAA CTATTTGTGC TCTGATATTC TGAAGCTACA TGTGTAAGGC 
    CCAAATCTGG GAAATAATCA AGGTCAAAAT GAAATGCAGA CAATATTTCC 
    TAATCCT

    Gene models with high sequence identity

    1. AT4G17720.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 7e-75; Score: 278.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNA-binding domain, RBD 1.2e-11
    HMMPanther ALDO/KETO REDUCTASE 4.3e-72
    HMMPanther Aldo/keto reductase 4.3e-72
    HMMSmart RNA recognition motif, RNP-1 2.1e-07
    Gene3D Nucleotide-binding, alpha-beta plait 1.9e-06
    HMMPfam RNA recognition motif, RNP-1 3e-07
    ProfileScan RNA recognition motif, RNP-1 11.179

    See the detailed result >

    AT4G17720.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G46870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR