K31427

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31427

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31427

Determination of introduced cDNA(s)

  • J033073M17 - Rice Full-length cDNAs - Original: J033073M17

    full reading [+] show sequence

    Nucleotide sequence: J033073M17 - full reading
    GGGCTTCTCT CTCTCTCTCT CTCGGTCTCC CACCTCCTCA TCCCGCTCGC 
    CCGCTCGCCG ACACGGCGCA AATCCAAGAA CCCCCCACGC CGTGCGTGGA
    CACCTCGCCT CGCCTCGTCC TCGCCCATCT CTCTCCTTTT GCCCGCATCC
    GCGGCCTCGC CTCGTAGTCC CCGCCGCATC TCGCCATTCC GCTACGCGCC
    CAAGCTACTG CTAGTAGTAC TATCTGCTCC CCCGTGCGTG GTCGGGTCAG
    GTGGGTCGGC CGCGAGATCC CGCCATGGAG GTCAGGACAG TAAAAGTTAG
    CAACATTTCA TTGAATGCTT CAAAAAGGGA GATCACAGAG TTCTTCTCTT
    TCTCTGGAGA TATAGAATAT GTTGAGATGC AAAGTGAATC TGAAAGGTCA
    CAGCTTGCTT ATGTTACATT TAAGGACTCA CAAGGAGCAG ATACTGCTGT
    GCTTCTCTCA GGGGCAACAA TTGTTGACCG TTCTGTCGTC ATAACTCCAG
    TTGTGAACTA TCAACTGCCT CCTGATGCAC GCAAACAATC CGCAGGAGAG
    AAATCTTCCT CTGCTGAATC TGTAGTCAGG AAGGCAGAGG ATGTTGTGAG
    CAGCATGTTG GCAAAGGGCT TTGTCCTCAG CAAGGATGCT CTGAACGTAG
    CAAGATCTTT TGACGAGCGT CACAACATAC TGTCCAATGC TACAGCTACT
    GTCGCATCTC TAGACCGCCA GTATGGCGTG AGTGAAAAGA TCAGTTTGGG
    CCGTGCAATT GTTGGTAGCA AGGTCAAGGA GGTGGATGAT CGTTATCAGG
    TGTCAGAACT CACAAAGTCC GCTTTAGCGG CTGCGGAGCA GAAAGCCAGC
    ATTGCAAGCT CTGCTATCAT GAATAACCAG TATGTCTCAG CTGGTGCTTC
    CTGGTTAACA AGCGCATTTG GCATGGTAAC CAAGGCGGCA GGTGACATGA
    GCTCCATGAC CAAAGATAAG GTAGACAGGG CCGAAGAGGA GAGGAAAGCG
    ATCATGTGGG AAGAGAGGAA TGGGCTTGTA AGTGATTATG CCAAGATCCA
    TCTTGATGAA CCCTCTTCAT GGGAGCCTGC AGTTCTTCCG TTGGAATCTG
    TGGATGAGCA GAAGCTCCAG GCTGTGTGAT CTGCACAATC CAATGGTGGT
    CGTTTCTCTG CACGTCATTC TTTTGTTCAT GTCCAATATA GAAGATTGTT
    TTTCACCGCT GCACGGTAGC AAAAATATTG AGCTTATTGC CTATAGTATG
    ATGTAAATTT TAGAAATTCC CCATGTGTTT TCTTCCAGCT TTGTTATAGA
    CCACTGAAAG GCTTACTTGT TCAGTGTTAG ACATGGAAAT GAAAGTTGTT
    CCAGACTTCC AGGCATACCT CTTGTTATGG TAGAACATGT TTCTGTGAGT
    TATCTCAGAA CTATTTGTGC TCTGATATTC TGAAGCTACA TGTGTAAGGC
    CCAAATCTGG GAAATAATCA AGGTCAAAAT GAAATGCAGA CAATATTTCC
    TAATCCT

    Gene models with high sequence identity

    1. AT4G17720.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 7e-75; Score: 278.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNA-binding domain, RBD 0.000000000012
    HMMPanther ALDO/KETO REDUCTASE 4.3e-72
    HMMPanther Aldo/keto reductase 4.3e-72
    HMMSmart RNA recognition motif, RNP-1 0.00000021
    Gene3D Nucleotide-binding, alpha-beta plait 0.0000019
    HMMPfam RNA recognition motif, RNP-1 0.0000003
    ProfileScan RNA recognition motif, RNP-1 11.179

    See the detailed result >

    AT4G17720.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G46870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR