K31428

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31428

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31428

Determination of introduced cDNA(s)

  • J013149F15 - Rice Full-length cDNAs - Original: J013149F15

    full reading [+] show sequence

    Nucleotide sequence: J013149F15 - full reading 
    GGCGCTATCC ATTCTCCTCC TCTCCCACGT CTCCTGATCC GTACCTGCTT 
    AATTCCTTCG TCTTCCTCTC CTCTTCCTTC TTCTTCCACC ATGGCTGCAA 
    CCGCTTCGTC CTCCTCCACC GCCACCGCCT CGCCGCTCCT CCTCCCCTCG 
    GCCCGCCGCC CGCTCCCTTC CTCCAAACCG TGGCTTCCCG ACGGCAGGGC 
    GTTCAGGGGC AGCAGGGCGC TGAGTTCAGC GGCGCGGCGA TGCTTCTGCT 
    GCTGCTGCAG GTGCGAGGCC GCCGGTGAGG CGGGAACGGC GCCGCCGCCG 
    CAGCAGCGCG GAGTGGATGA CGGCGGCGTG GTCTGTACCA GCGCCACCCG 
    GTCCCGGAGG AGGAGCGTTC TTGGAGTCGC CGTGGGGGTA TCGTCGGCGC 
    TGGCGCTCGG CCTGGCCGCG TTCGATGATG CCCTCGCCGC CGGGCTGCCT 
    CCCGAGGAGA AGCCCAAGCT CTGCGACGCC GCCTGCGAGA AGGACCTCGA 
    AAATGTGCCC ATGGTGACTA CAGAGTCTGG TCTTCAGTAC AAGGATATCA 
    AAGTGGGTGA AGGCCCAAGT CCACCCATTG GCTTCCAGGT TGCTGCAAAT 
    TATGTTGCCA TGGTACCGAA TGGACAGATA TTTGACAGTT CTCTGGAAAA 
    GGGGCAGCCC TACATATTCC GTGTTGGTTC AGGACAGGTG ATAAAGGGAC 
    TTGATGAAGG GATATTGTCA ATGAAGGTTG GAGGACTACG GCGATTATAC 
    ATACCTGGCC CGCTAGCATT TCCGAAGGGC CTTACTTCAG CTCCTGGAAG 
    GCAAGAGTGG CTCCAAGCAG CCCAGTTATG TTCGACGTCA ACTTATTGTA 
    CATACCAGGT CTTGATGATG AGTGAAAGCA TGCATAGGAA TATATATATA 
    TATACATCCT CTTCTGGTTT TCCACATCTT TTACAAGAAG GATGATGAAG 
    CAAATGATTT ACCATACAGT ATATCGATCT AGAGGGACCA TTAATTCTTT 
    TCGGCTGTAG ATTGTGGGCA AGTATGTTAT GTGTTGAGTA CAAAATTTTA 
    TTATTAGACT GCTTTAAGTA GCATGTAAAG ACTTTTGTAG CTCTCATTTT 
    TCTTAATGAA ATTGGGGGAG CTCTGCTTCC TAGTTT

    Gene models with high sequence identity

    1. AT2G43560.1 [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 4e-58; Score: 222.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 8.2e-24
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 16.977
    HMMPanther FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1.1e-44
    HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 1.1e-44
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 2e-17
    superfamily FKBP-like 7.3e-27

    See the detailed result >

    AT2G43560.1

    Model type
    Protein coding
    Short Description
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1); Has 8823 Blast hits to 8572 proteins in 1646 species: Archae - 42; Bacteria - 4685; Metazoa - 1489; Fungi - 464; Plants - 749; Viruses - 0; Other Eukaryotes - 1394 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR