K31434

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31434

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Original: K31434

Determination of introduced cDNA(s)

  • J013124N18 - Rice Full-length cDNAs - Original: J013124N18

    full reading [+] show sequence

    Nucleotide sequence: J013124N18 - full reading 
    GACCGCTCGC TCATTTGGGC AGAAACCCTA GCCCTAGGCG AGCCCCTAAA 
    CCCCAACCTC GCCCGCGATT TCCTCCCCGA GGGCGTCGAG GGGAGGTAGG 
    TTGGCGCCAT GGATGCGATG AGGAAGCAAC TCGACGTGCT CATGGGGGCA 
    AACCGCAACG GCGACGTGCG GGAGGTCAGC CGCAAGTACT ACGACCGCGA 
    CGTCTGCCGC CTCTTCCTCG CCGGCCTCTG CCCCCACGAC CTCTTCCAGC 
    TCACGAAAAT GGATCTCGGG CCTTGCCCCA AAGTTCATTC GCTGCAGCTA 
    CGGAAGGATT ATGAAGAAGT AAAGGCAAAA GGAACAGAAA ATTATGATAG 
    GGAACTCGAG GAAATGATAG ACAGGCTCAT CGTGGAGTGC GAGAGGAAAA 
    TTCAGAGGGC GCTGAAGCGT CTTGCTGATG AGGATGCCAA GGCTGCTATT 
    GCAATATCTG TTTCTGAGGT TACTCAGACA GATGAGGTGT TGCAGTTGTC 
    AAAGGAGATC AAGGAAAAAA TGAAAGAAGT TGATACCTAT GATTTTGGAG 
    GGAAAACTGA TGATAAAATC AAGACCATGG AAGTGGTGGA AGAATTAAGA 
    TCTAAAAGGG CTGACATGCA GGCTACCCTT CTGCTTGATG CCTTTAACAA 
    GGACAGAGCT TCATTACCTC AGCCTACTCC AACACCTCAA ATGGCATCAG 
    TACCAGCACC TGCTCACCCT GATGCTCGCA CTCAAGAAAT GATCAACGAA 
    AAGATAAAGA AAGCTGAAGA GCTTGGTGAA CAAGGGATGG TAGATGAAGC 
    ACAGAAAGTT ATGGAAGAAG CAGAGGCTTT GAAAAAGTTG GCAGCACGGA 
    GGGAACCAAC TTCGGATCCT ACTAAATATA CTGCTGCTGA TGTTCGAATT 
    ACTGATCAGA AGTTGCGTCT CTGTGACATA TGTGGAGCAT TTCTAAGTGT 
    CTACGACAAT GATCGACGCC TTGCTGACCA TTTTGGAGGA AAGCTACATT 
    TGGGATACAT GCTGATTCGT GAGAAACTGA AAGAACTACA GGTACATTCT 
    TGCATACCCG ACTTACCGCA AGTAAAGTTT TTGGGGAATG ATAATTAATT 
    TAGAATTCCA AATGTCTACT GCCCTAAAGG CATAATCACA AAAAGCCAAG 
    AAATCTACAC AATCTTATTT GACCTTATAT TCTGTTTGTA CATTATGATC 
    CAAGTATGTG GGTTTTGTGC TTTCTCTGAA TTTGTTAAGG TGGAAATTTT 
    GT

    Gene models with high sequence identity

    1. AT5G17440.1 [+] show detail - LUC7 related protein
      E-value: 8e-132; Score: 467.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 7.1e-227
    HMMPanther LUC7 related 7.1e-227
    HMMPfam LUC7 related 5.9e-49
    HMMPfam LUC7 related 6.1e-42

    See the detailed result >

    AT5G17440.1

    Model type
    Protein coding
    Short Description
    LUC7 related protein
    Computational Description
    LUC7 related protein; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR