K31440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31440

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31440

Determination of introduced cDNA(s)

  • J023089F16 - Rice Full-length cDNAs - Original: J023089F16

    full reading [+] show sequence

    Nucleotide sequence: J023089F16 - full reading 
    GACAAGACCT TCTCGAAGCT TCCTCCCCCC CAAACCCCTT CCGCTCCTCC 
    TCCTCCTCCC AAATCCACCA CGGCGACGCC GCCGCCGCAG AGCCCCTAGC 
    TCCCGGAGGT CCCTCGCCCC CGCCAGCTCC GACGGCCTCA CGGAAGGAGG 
    AGTAACGTGG GCGTTGATTG GATTTTTTTG TTTTCCCCCC ACCTTGAGTG 
    AGTCTGTGCC GTTTCCCCGG CGGCGAGGGA GGGCAGAGGG CTGATCATGG 
    TCGTGCGCCG CCGGTGCCTT GCCGAGATTT CCCCCAACCG CCACCGACGA 
    TCGTTCACTT GGCACAAAGG GGAGTAGCAC TGTCCAAGCT GTTGTGGTCC 
    GTCAGGGAGA TTGGCCAACC TGTGGGGTTT CAGATCGACA TAAGTACGTC 
    AGTATTTCAG CCATCGATCA ATCTGGCGGT TCATAGGGCT GTGCTTGCAA 
    CCTTTCTGGC AGAAAGGAGA GAGCAAAGTG ATTTGCTGTC TCCTGTTGAT 
    TGTGGCCTGT TGAGGCCCAG TAATGGCAGA TGCTAGTTCA AGGACTGACA 
    CATCGATTGT TGTAGACAAC GACGACAAAA ACCACCAGTT AGAAAACGGA 
    CATAGTGGTG CAGTCATGGC TTCTAACTCT TCAGATAGAT CTGACAGATC 
    TGACAAACTT ATGGACCAAA AGACAATTCG GCGGCTTGCT CAAAATCGTG 
    AGGCAGCAAG AAAAAGTCGG CTGAGGAAAA AGGCATATGT GCAACAACTA 
    GAGAGCAGTA AGCTGAAGCT TGCACAGCTA GAGCAGGAAC TTCAGAAAGC 
    TCGTCAGCAG GGAATCTTCA TCTCTAGCTC TGGAGACCAG ACCCATGCCA 
    TGAGTGGAAA TGGGGCATTG ACTTTTGACT TAGAATACAC TAGATGGCTC 
    GAGGAGCAAA ATAAGCAGAT AAATGAGTTG AGGACAGCAG TGAATGCTCA 
    TGCAAGTGAC AGTGACCTTC GTCTTATTGT TGATGGCATA ATGGCGCATT 
    ATGACGAGGT ATTCAAGGTT AAGGGTGTAG CTGCAAAGGC CGATGTGTTT 
    CATATACTTT CAGGCATGTG GAAGACACCC GCAGAAAGAT GCTTCCTGTG 
    GCTTGGTGGT TTCCGTCCAT CTGAGCTTCT AAAGCTCCTA GCAAATCACC 
    TCGAACCTTT AACCGAGCAG CAGTTGCTGG GATTAAACAA CCTCCAGGAA 
    TCTTCTCAGC AGGCGGAGGA TGCACTTTCA CAAGGTATGG AAGCACTGCA 
    GCAATCTCTG GCAGATACTT TGGCTGGATC TCTCGGTTCA TCAGGGTCTT 
    CTGGGAATGT GGCGAACTAC ATGGGTCAGA TGGCAATGGC CATGGGTAAA 
    CTAGGAACGC TCGAGAATTT CCTTTGCCAG GCGGACAACC TGCGACAGCA 
    GACATTGCAT CAAATGCAAC GAATTCTGAC GATCCGGCAA GCCTCGCGTG 
    CTCTTCTTGC CATACACGAT TACTTTTCAC GCTTGCGTGC TTTGAGTTCG 
    CTGTGGCTTG CTAGGCCACG GGAGTAACAA AATGGTCATG TGTGCCTGTG 
    ACGAGGTTAG ACGCTCATTT TGATGGACTG CAGATAATTG GGTTTTTCCC 
    TGTACAATTG TGTTTGGCAG CTGTGGAGCT AAAGTTAAAA ACTGTACCTA 
    AAGTGGTGTA TGCAAATAGG TGAAGCCTCT AAGTAAGTTA TAACGATTGC 
    ATTATTGTGT TAGCAATAAA AGTTGGGTAA TTCAGGATGT GTCCTGAGTT 
    GTTTTGTTGT AGTAGAAGAA CTGCATGTAG TGGCTGGAAA TGCAGTGTTG 
    AATGTAACTA AAGCTCTGCT GCTCACGTGC ATAATGTTGT GTAGTAATAG 
    TTAGCTAGTG ATGCCCATTT TACCTGCACT CCTCTGGGAA GCTGAAACTG 
    CAACCTGAAG CAACCACGGT GCAGAAGACC GCATGCATGG TAAATGATTA 
    AAAGGATATA TATGGGCTCA ACATCGCTGC CAAATCCTGA GATAATGAAC 
    AGGCATGCTA AACTGC

    Gene models with high sequence identity

    1. AT5G06950.4 [+] show detail - bZIP transcription factor family protein
      E-value: 2e-102; Score: 370.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam bZIP transcription factor, bZIP-1 0.000000072
    HMMPanther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 0.00042
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 9.37
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 0.00000008
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G06950.4

    Model type
    Protein coding
    Short Description
    bZIP transcription factor family protein
    Curator Summary
    Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.
    Computational Description
    AHBP-1B; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 6 (TAIR:AT3G12250.2); Has 882 Blast hits to 882 proteins in 71 species: Archae - 0; Bacteria - 9; Metazoa - 3; Fungi - 6; Plants - 812; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR