K31444

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31444

Determination of introduced cDNA(s)

J033131K03 - Rice Full-length cDNAs - Original: J033131K03

full reading [+] show sequence

GGTTGGTTCC CTTCTTGAGA CCCCAAAACC CAACTAGGAA GGACAAGGAC 
ACATCCCTCT CCCTCTTCCA CCAAGAGAGA TAGAGCCAAG AACCGGACGA 
GGTAGAAGAG ATTGAGCCGC CACGGCAGTG GGAGCGCGCG CGCGAGTTCC 
CCGAGATCCG CGAGATCTCC GTCGCCGGCT CATGCCACTG GTCGGTTCTT 
GGGGCGGCGG CGGCGGCGGC GGGGGGTGGT GAGTCTGTGG CCGTTTCTTG 
CGGCGTGGTG AGGTGAGGGG AGGGAGAAAG AGAGGCTGCA CATGTCCGTC 
ATGGCGCGGC CCCGCTTCGA GGAGGATGAC GAGGATGAGT TCTTTGACTC 
GAGGGAGGTC ATGTCGCCGG CGTCCGTCTC TTCTCCGGCG AGCTCCGGGC 
GCTACGACGG GCCCATGCTC GAGGTGTGGG CCACCGACCC GTGCAGCGTC 
CATGAGCGCC GTCAGAGGTT CATCAAGTCC TTGGGCCTCT CGGATTCGAG 
CCCCTCCGCC GGCGGCGGCG GCGACCGGCC CGACGAGGAG CCGTGCTCGA 
GGTCCAGTGC CGCAGAAGAG ATCCTCCCGT GCAGCCCCAC CGTCGAGCTG 
GTCTCAGCCG TCCCCAGTTT TGCGTGCAGA GGCGAGGAGC CGGGAGCGTC 
AGGCGGCGGC GGCGGCGCGG AGGTGTTGGA TTGTGTATTC AAGAACTTGG 
ACGATGGTAC AGTGTTTGTC GTCGACGAGA TGGGAAAAGA TGGGAGTTTC 
AGGAGCCTCA GGGACAGGCG ATCCAACCGG ACAGTTACTG CAGCGGAATT 
CGAACGGACC TACGGCTCGT CCCCATTCAT CTGTGAGCTG ATGCGGCGGG 
TGGATGATTC GGATGAGTCC TCTGCTGTGG AGAAGGCTCT GGTCAGGGGA 
AGGAGAAGGA GGAGGAGATT TGGATGGCTG CGCAGGCTCG GCATCCGTGG 
CTGCGTCGTC GATGTGGAGG AGGACGATGA GACGAATTCA ACATCCTCGA 
GTTCTTGTCG GAGTTGCTCT GGGAAGGTTG ATAGGGTCAA GGTGAGGCTT 
TACAAGAAGA GGTCAAAGGA ATTGTCCGCG GTGTACAGGG GCCAAGACAT 
CAAGGCGCAC GAAGGCGCAA TTGTGACCAT GAAGTTTAGC TCTGATGGAC 
AGTATCTGGC CACTGGAGGT GAGGATGTGG TTGTGCGTGT GTGGCGGGTG 
GTGGAGGGGG AGAGGCCCAA TGAACTTGAC TTTGCCGAAG ATGATCCTTC 
ATGCGTGTTC TTCACAGTCA ATGAAAACTC CGAATTGGCC CCTGTCAACT 
CCAGTGAAGG GAGTAAGAGC AAGCACTACA AGAACTCAAA GGTGTCGACA 
GATCCAGCCT GTGTTGTGAT CCCTCATAGG ACCTTTGCAT TATCCCAGGA 
GCCTGTGCAT GAATTCTATG GACATGATGA TGCGATCTTG GATCTTTCAT 
GGTCAAAAAA TAGGGACTTA CTTTCTTCAT CCATGGATAA AACTGTACGA 
TTGTGGCAGG TTGGGTGCAA TAGTTGCCTG AAGGTTTTCT CCCATACTAA 
CTACGTAACA TGTGTGCAGT TTCATCCTAC CAGTGACAAT TATTTTATCA 
GTGGTTGTAT CGACGGATTG GTTCGCATTT GGGATGTTCG TAGATGCCAA 
GTCGTGGACT GGGCTGATAC CAAAGAGATA ATCACTGCAG TTTGTTACCG 
CCCTGATGGA AAGGCCGCAG TGGTTGGGAC CATAACAGGG AATTGTCGCC 
ACTACGATGC ATCAGAAAAT CACCTGGAGC TGGAATCTCA AGTCGCTCTC 
AATGGAAGAA AGAAATCTCC ACTTAAAAGA ATAATCGGTT TCCAGTACTG 
CCCATCTGAT CCAAAGAAAT TGATGGTAAC ATCTGGCGAC TCGCAAGTCC 
GTATTCTTGA TGGGCTTCAC GTAATTTCCA ACTACAAAGG ACTGCGAAGT 
TCAAGTCAAG TTGCTGCATC ATTCACACCA GATGGAGATC ACATTATATC 
TGCTAGTGAT GATTCCAGTA TCTACATGTG GAACTATGCA AACCAAATAG 
CTCCCGTCAC AAACCATGTG AAGACTGTAT GGTCAAATGA GCACTTCCTG 
CCATGATGTG GCCATTGCGA TACCATGGAA TGCCTCTCAG ACAAGGAATT 
CTATTTCACT GGCTTGCAGT ATCACTTCTT CACAGCAAGA AGTCTTGGAT 
GAGTTCCACA ATGAACATGA TAGCTCATCA TGTTCTCATA CTGAGGATTC 
CCCTGATGGT GATAGTCTGT ACCAATTACC ATCTGGAAAT TTCACTCTTA 
GCAGTGCCTT CTTTGCGGAA TCTGCTCCAA GGGGATCAGC GACATGGCCA 
GAGGAGCAGT TGCCATCAAA TTCGACAACA CAGTCTACCT TGAGGAAATC 
TCAGTACAAG TTCCTGAAGG CTTCTTGCCA GAATGCTGCT ACGCACGCCT 
GGGGCCAGGT AATAGTGGCT GCAGGCTGGG ATGGCTACAT CAGATCCTTC 
CAGAACTATG GCTTACCTGT GCAAGTGTGA CATGGTACTA GACATGCATC 
ATTTACCATT GATAGTCCAA GGCAAAAGCT TGGGTATGCC TTGAGAAGTC 
TGGCTGGCCC TGACGCCCGT CCTGATTCAT TATTTCAGCA CAAAGCGTCA 
CATGGCTGGT GCGTGAGCTG AATTGCTTGT GGACCAGAAG TTGTATGTAG 
TCTGAGTGGT CCTTCAAGAT CTTGACAGCG TCAACACATC GTAGCAGGCC 
CGCGGAAGAT GAATCGCCTC GCAGAATTAT GCAAAGGCAT GTGGGGATTT 
AGGCAGCAAC ACGTTGGTGT TCTTTCTTTC TTTCTCTTCT TTGTTTTGGC 
TCCTGTTAGG GCCATCCGTA AATATATATA GGAGACATAC ATATTTTTGC 
CGAGTTGAAA CTTCCCTCGC CCGAACCGGA TAGTCGATGG ACAATGGGCA 
AGTGGAGAGC TAGAAATCAC TGTTGGATAG GGGGGAAAAA TTCAGAGTGG 
TGGGGGTGCA CATACTACTG GATTCGTTTC ATTTGTTCAC ATTTCATGAT 
TCATAGCCTG GCTGAGTCTA TGATGGACAT TGATACTG

Gene models with high sequence identity

AT5G24320.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 1e-94; Score: 345.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	WD40 repeat 2	14.753
ProfileScan	WD40 repeat 2	12.213
ProfileScan	WD40 repeat 2	13.282
ProfileScan	WD40 repeat 2	10.007
ProfileScan	WD40-repeat-containing domain	17.086
ProfileScan	WD40-repeat-containing domain	8.861
HMMPanther	WD REPEAT DOMAIN 44	1.6e-127
HMMPfam	WD40 repeat, subgroup	0.000037
HMMPfam	WD40 repeat, subgroup	0.000000028
HMMPfam	WD40 repeat, subgroup	0.0000000037
HMMPfam	WD40 repeat, subgroup	0.00073
superfamily	WD40 repeat-like-containing domain	1.3e-51
HMMSmart	WD40 repeat	0.00019
HMMSmart	WD40 repeat	0.000000049
HMMSmart	WD40 repeat	0.00000000012
HMMSmart	WD40 repeat	6.5
HMMSmart	WD40 repeat	11
HMMSmart	WD40 repeat	0.075
FPrintScan	G-protein beta WD-40 repeat, region	0.0000078
FPrintScan	G-protein beta WD-40 repeat, region	0.0000078
FPrintScan	G-protein beta WD-40 repeat, region	0.0000078
Gene3D	WD40/YVTN repeat-like-containing domain	4.3e-53
PatternScan	Homeobox protein, antennapedia type, conserved site	0

See the detailed result >

AT5G24320.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G53500.1); Has 26833 Blast hits to 16918 proteins in 673 species: Archae - 62; Bacteria - 5430; Metazoa - 9873; Fungi - 5372; Plants - 2902; Viruses - 3; Other Eukaryotes - 3191 (source: NCBI BLink).
Link: InterPro Scan - TAIR