K31444

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31444

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31444

Determination of introduced cDNA(s)

  • J033131K03 - Rice Full-length cDNAs - Original: J033131K03

    full reading [+] show sequence

    Nucleotide sequence: J033131K03 - full reading 
    GGTTGGTTCC CTTCTTGAGA CCCCAAAACC CAACTAGGAA GGACAAGGAC 
    ACATCCCTCT CCCTCTTCCA CCAAGAGAGA TAGAGCCAAG AACCGGACGA 
    GGTAGAAGAG ATTGAGCCGC CACGGCAGTG GGAGCGCGCG CGCGAGTTCC 
    CCGAGATCCG CGAGATCTCC GTCGCCGGCT CATGCCACTG GTCGGTTCTT 
    GGGGCGGCGG CGGCGGCGGC GGGGGGTGGT GAGTCTGTGG CCGTTTCTTG 
    CGGCGTGGTG AGGTGAGGGG AGGGAGAAAG AGAGGCTGCA CATGTCCGTC 
    ATGGCGCGGC CCCGCTTCGA GGAGGATGAC GAGGATGAGT TCTTTGACTC 
    GAGGGAGGTC ATGTCGCCGG CGTCCGTCTC TTCTCCGGCG AGCTCCGGGC 
    GCTACGACGG GCCCATGCTC GAGGTGTGGG CCACCGACCC GTGCAGCGTC 
    CATGAGCGCC GTCAGAGGTT CATCAAGTCC TTGGGCCTCT CGGATTCGAG 
    CCCCTCCGCC GGCGGCGGCG GCGACCGGCC CGACGAGGAG CCGTGCTCGA 
    GGTCCAGTGC CGCAGAAGAG ATCCTCCCGT GCAGCCCCAC CGTCGAGCTG 
    GTCTCAGCCG TCCCCAGTTT TGCGTGCAGA GGCGAGGAGC CGGGAGCGTC 
    AGGCGGCGGC GGCGGCGCGG AGGTGTTGGA TTGTGTATTC AAGAACTTGG 
    ACGATGGTAC AGTGTTTGTC GTCGACGAGA TGGGAAAAGA TGGGAGTTTC 
    AGGAGCCTCA GGGACAGGCG ATCCAACCGG ACAGTTACTG CAGCGGAATT 
    CGAACGGACC TACGGCTCGT CCCCATTCAT CTGTGAGCTG ATGCGGCGGG 
    TGGATGATTC GGATGAGTCC TCTGCTGTGG AGAAGGCTCT GGTCAGGGGA 
    AGGAGAAGGA GGAGGAGATT TGGATGGCTG CGCAGGCTCG GCATCCGTGG 
    CTGCGTCGTC GATGTGGAGG AGGACGATGA GACGAATTCA ACATCCTCGA 
    GTTCTTGTCG GAGTTGCTCT GGGAAGGTTG ATAGGGTCAA GGTGAGGCTT 
    TACAAGAAGA GGTCAAAGGA ATTGTCCGCG GTGTACAGGG GCCAAGACAT 
    CAAGGCGCAC GAAGGCGCAA TTGTGACCAT GAAGTTTAGC TCTGATGGAC 
    AGTATCTGGC CACTGGAGGT GAGGATGTGG TTGTGCGTGT GTGGCGGGTG 
    GTGGAGGGGG AGAGGCCCAA TGAACTTGAC TTTGCCGAAG ATGATCCTTC 
    ATGCGTGTTC TTCACAGTCA ATGAAAACTC CGAATTGGCC CCTGTCAACT 
    CCAGTGAAGG GAGTAAGAGC AAGCACTACA AGAACTCAAA GGTGTCGACA 
    GATCCAGCCT GTGTTGTGAT CCCTCATAGG ACCTTTGCAT TATCCCAGGA 
    GCCTGTGCAT GAATTCTATG GACATGATGA TGCGATCTTG GATCTTTCAT 
    GGTCAAAAAA TAGGGACTTA CTTTCTTCAT CCATGGATAA AACTGTACGA 
    TTGTGGCAGG TTGGGTGCAA TAGTTGCCTG AAGGTTTTCT CCCATACTAA 
    CTACGTAACA TGTGTGCAGT TTCATCCTAC CAGTGACAAT TATTTTATCA 
    GTGGTTGTAT CGACGGATTG GTTCGCATTT GGGATGTTCG TAGATGCCAA 
    GTCGTGGACT GGGCTGATAC CAAAGAGATA ATCACTGCAG TTTGTTACCG 
    CCCTGATGGA AAGGCCGCAG TGGTTGGGAC CATAACAGGG AATTGTCGCC 
    ACTACGATGC ATCAGAAAAT CACCTGGAGC TGGAATCTCA AGTCGCTCTC 
    AATGGAAGAA AGAAATCTCC ACTTAAAAGA ATAATCGGTT TCCAGTACTG 
    CCCATCTGAT CCAAAGAAAT TGATGGTAAC ATCTGGCGAC TCGCAAGTCC 
    GTATTCTTGA TGGGCTTCAC GTAATTTCCA ACTACAAAGG ACTGCGAAGT 
    TCAAGTCAAG TTGCTGCATC ATTCACACCA GATGGAGATC ACATTATATC 
    TGCTAGTGAT GATTCCAGTA TCTACATGTG GAACTATGCA AACCAAATAG 
    CTCCCGTCAC AAACCATGTG AAGACTGTAT GGTCAAATGA GCACTTCCTG 
    CCATGATGTG GCCATTGCGA TACCATGGAA TGCCTCTCAG ACAAGGAATT 
    CTATTTCACT GGCTTGCAGT ATCACTTCTT CACAGCAAGA AGTCTTGGAT 
    GAGTTCCACA ATGAACATGA TAGCTCATCA TGTTCTCATA CTGAGGATTC 
    CCCTGATGGT GATAGTCTGT ACCAATTACC ATCTGGAAAT TTCACTCTTA 
    GCAGTGCCTT CTTTGCGGAA TCTGCTCCAA GGGGATCAGC GACATGGCCA 
    GAGGAGCAGT TGCCATCAAA TTCGACAACA CAGTCTACCT TGAGGAAATC 
    TCAGTACAAG TTCCTGAAGG CTTCTTGCCA GAATGCTGCT ACGCACGCCT 
    GGGGCCAGGT AATAGTGGCT GCAGGCTGGG ATGGCTACAT CAGATCCTTC 
    CAGAACTATG GCTTACCTGT GCAAGTGTGA CATGGTACTA GACATGCATC 
    ATTTACCATT GATAGTCCAA GGCAAAAGCT TGGGTATGCC TTGAGAAGTC 
    TGGCTGGCCC TGACGCCCGT CCTGATTCAT TATTTCAGCA CAAAGCGTCA 
    CATGGCTGGT GCGTGAGCTG AATTGCTTGT GGACCAGAAG TTGTATGTAG 
    TCTGAGTGGT CCTTCAAGAT CTTGACAGCG TCAACACATC GTAGCAGGCC 
    CGCGGAAGAT GAATCGCCTC GCAGAATTAT GCAAAGGCAT GTGGGGATTT 
    AGGCAGCAAC ACGTTGGTGT TCTTTCTTTC TTTCTCTTCT TTGTTTTGGC 
    TCCTGTTAGG GCCATCCGTA AATATATATA GGAGACATAC ATATTTTTGC 
    CGAGTTGAAA CTTCCCTCGC CCGAACCGGA TAGTCGATGG ACAATGGGCA 
    AGTGGAGAGC TAGAAATCAC TGTTGGATAG GGGGGAAAAA TTCAGAGTGG 
    TGGGGGTGCA CATACTACTG GATTCGTTTC ATTTGTTCAC ATTTCATGAT 
    TCATAGCCTG GCTGAGTCTA TGATGGACAT TGATACTG

    Gene models with high sequence identity

    1. AT5G24320.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 1e-94; Score: 345.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 14.753
    ProfileScan WD40 repeat 2 12.213
    ProfileScan WD40 repeat 2 13.282
    ProfileScan WD40 repeat 2 10.007
    ProfileScan WD40-repeat-containing domain 17.086
    ProfileScan WD40-repeat-containing domain 8.861
    HMMPanther WD REPEAT DOMAIN 44 1.6e-127
    HMMPfam WD40 repeat, subgroup 3.7e-05
    HMMPfam WD40 repeat, subgroup 2.8e-08
    HMMPfam WD40 repeat, subgroup 3.7e-09
    HMMPfam WD40 repeat, subgroup 0.00073
    superfamily WD40 repeat-like-containing domain 1.3e-51
    HMMSmart WD40 repeat 0.00019
    HMMSmart WD40 repeat 4.9e-08
    HMMSmart WD40 repeat 1.2e-10
    HMMSmart WD40 repeat 6.5
    HMMSmart WD40 repeat 11
    HMMSmart WD40 repeat 0.075
    FPrintScan G-protein beta WD-40 repeat, region 7.8e-06
    FPrintScan G-protein beta WD-40 repeat, region 7.8e-06
    FPrintScan G-protein beta WD-40 repeat, region 7.8e-06
    Gene3D WD40/YVTN repeat-like-containing domain 4.3e-53
    PatternScan Homeobox protein, antennapedia type, conserved site 0

    See the detailed result >

    AT5G24320.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G53500.1); Has 26833 Blast hits to 16918 proteins in 673 species: Archae - 62; Bacteria - 5430; Metazoa - 9873; Fungi - 5372; Plants - 2902; Viruses - 3; Other Eukaryotes - 3191 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR