K31447

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31447

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31447

Determination of introduced cDNA(s)

  • J023073O08 - Rice Full-length cDNAs - Original: J023073O08

    full reading [+] show sequence

    Nucleotide sequence: J023073O08 - full reading 
    GAGGTAGCCA AACCACACCA CCATAAAGCT AGCTTGCAAA GGGGATAGAG 
    TAGTAGAGAG AGAGAGAGAG GAGAGGAGGA GGAAGAAGAT GGGGAGGGGG 
    AAGGTGGAGC TGAAGCGGAT CGAGAACAAG ATCAGCCGGC AGGTGACGTT 
    CGCCAAGCGC AGGAACGGCC TGCTCAAGAA GGCCTACGAG CTCTCCCTCC 
    TCTGCGACGC CGAGGTCGCC CTCATCATCT TCTCCGGCCG CGGCCGCCTC 
    TTCGAGTTCT CCAGCTCATC ATGCATGTAC AAAACCTTGG AGAGGTACCG 
    CAGCTGCAAC TACAACTCAC AGGATGCAGC AGCTCCAGAA AACGAAATTA 
    ATTACCAAGA ATACCTGAAG CTGAAAACAA GAGTTGAATT TCTTCAAACC 
    ACACAGAGAA ATATTCTTGG TGAGGATTTG GGCCCACTAA GCATGAAGGA 
    GCTGGAGCAG CTTGAGAACC AGATAGAAGT ATCCCTCAAA CAAGTCAGGT 
    CAAGAAAGAA CCAAGCACTG CTTGATCAGC TGTTTGATCT GAAGAGCAAG 
    GAGCAACAGC TGCAAGATCT CAACAAAGAC TTGAGGAAAA AGTTACAGGA 
    AACCAGTGCA GAGAATGTGC TCCATATGTC CTGGCAAGAT GGTGGTGGGC 
    ACAGCGGTTC TAGCACTGTT CTTGCTGATC AGCCTCATCA CCATCAGGGT 
    CTTCTCCACC CTCACCCAGA TCAGGGTGAC CATTCCCTGC AGATTGGGTA 
    TCATCACCCT CATGCTCACC ATCACCAGGC CTACATGGAC CATCTGAGCA 
    ATGAAGCAGC AGACATGGTT GCTCATCACC CCAATGAACA CATCCCATCC 
    GGCTGGATAT GATGTGTGTG TTCAGTTCAG GCTTCAGGCT TCAGAGAAGC 
    CAATGCAAAC AGTGTCCTGT AATCCAGTAA TTACAGGGCA TATGTAATGT 
    AATGTAATGT AATCCCTGAT CTATATTTTG CTAAGTACGT GCGTGCTCTC 
    TTACGACCTT CTCCCCCGAA CAGTTAATCA GGGGAATAAT AATTTCGTTT 
    GATGCACGTA CTGTATGTCT GTATCTGTCA CTGTATCGTA GGACCGTCCA 
    TGTATAACAA TTTCCGTTTT GGATGTGGTA ACAAGTTAAT TGGCACTTAA 
    ATTTATATTT GTGATGATCT GGGAGAGTAC CTAATCTC

    Gene models with high sequence identity

    1. AT5G15800.1 [+] show detail - K-box region and MADS-box transcription factor family protein
      E-value: 7e-56; Score: 214.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Transcription factor, MADS-box 3.7e-39
    PatternScan Transcription factor, MADS-box 0
    FPrintScan Transcription factor, MADS-box 7.3e-31
    FPrintScan Transcription factor, MADS-box 7.3e-31
    FPrintScan Transcription factor, MADS-box 7.3e-31
    HMMPanther MADS BOX PROTEIN 3.7e-111
    HMMPanther MADS BOX PROTEIN 3.7e-111
    Coil coiled-coil 0
    Coil coiled-coil 0
    superfamily Transcription factor, MADS-box 8.7e-32
    ProfileScan Transcription factor, MADS-box 32.52
    ProfileScan Transcription factor, K-box 15.693
    HMMPfam Transcription factor, K-box 3.1e-28
    HMMPfam Transcription factor, MADS-box 1e-25

    See the detailed result >

    AT5G15800.1

    Model type
    Protein coding
    Short Description
    K-box region and MADS-box transcription factor family protein
    Curator Summary
    Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.
    Computational Description
    SEPALLATA1 (SEP1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G02310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR