K31449

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31449

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31449

Determination of introduced cDNA(s)

  • J033091C12 - Rice Full-length cDNAs - Original: J033091C12

    full reading [+] show sequence

    Nucleotide sequence: J033091C12 - full reading 
    GCTCTCACAT CCTCCCATCG CGCCGCCACC TCTCCCCAAC CCTAGCTAGC 
    TCCCCCTCCT TCCCCGGCGG CGACATCGAC GATGGCGGCG GCTGCGGCAG 
    GCGGCGGCGG CGGCGGCGCC CCGCGGGCGC TCTCCCAGCG GGAGCAGGAC 
    ATCCAGATGA TGCTCGCGGC GGACGTCCAC CTCGGCACCA AGAACTGCGA 
    CTTCCAGATG GAGCGCTACG TCTACAAGCG CCGATCCGAC GGCATTTTCA 
    TCATTAACCT TGGCAAAACC TGGGAGAAGC TTCAGCTGGC TGCCAGAGTG 
    ATTGTTGCCA TTGAGAACCC ACAGGACATC ATCGTGCAGT CTGCTAGGCC 
    TTATGGTCAG AGGGCTGTCC TCAAGTTTGC ACAGTACACC GGAGCTCATG 
    CCATTGCTGG CAGGCACACT CCTGGTACAT TTACCAACCA ACTGCAAACC 
    TCATTCAGTG AGCCACGTCT TCTCATCCTT ACTGACCCCA GGACAGATCA 
    TCAGCCAATC AAGGAGTCTG CTCTTGGAAA CATCCCCACT ATTGCTTTCT 
    GTGACACTGA TTCTCCCATG CGCTATGTCG ACATTGGTAT TCCTGCCAAC 
    AACAAGGGGA AGCAGAGCAT TGGTTGCCTC TTCTGGCTGC TTGCTAGGAT 
    GGTTCTTCAG ATGCGTGGCA CAATTCTCCC TGGGCACAAG TGGGATGTCA 
    TGGTTGATCT TTTCTTTTAT AGAGATCCAG AGGAAGCTAA GGAGCAGGAG 
    GAAGAGGAGG CTGCAGTAGG TCCTGAATAT GCTGCAGTTG CTGAGTATGG 
    TGCTGCTCCA ACTGACAATT GGGGTGACCA GCAATGGGGT GGAGAGGTCC 
    AGCCTCCTGC CCTCCCTGCT GCACCGACTG GGGAATGGGG TGCTGCTCCA 
    GCTCCTGTGG CTGCAGAAGG GTGGGATGCA GTTGCTGTTC CTCCTGCCGC 
    CGCTGCTGCT GTTGCACCTC CTGCCGCCCC TGGATGGGAG GAAGGCAGTG 
    CTCCGGCACC TACTGGCTGG TAGGAAATGT GCGGATCATC ATTCGTCAGC 
    TACTGGAGGA AAACTGAGTT ACTTAACATT ATGTAATGTA TTTGGTAGAT 
    CTGTTTAAGT AGCTCCATGT TAAAGTATTG CATAATGTTA AGTGAGAATC 
    AATTTTGAAT GCCGATGCAT CTGGTT

    Gene models with high sequence identity

    1. AT1G72370.1 [+] show detail - 40s ribosomal protein SA
      E-value: 9e-107; Score: 384.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 40S RIBOSOMAL PROTEIN SA (P40) 9.5e-185
    HMMPanther Ribosomal protein S2, eukaryotic/archaeal 9.5e-185
    PatternScan Ribosomal protein S2, conserved site 0
    FPrintScan Ribosomal protein S2 1.3e-30
    FPrintScan Ribosomal protein S2 1.3e-30
    FPrintScan Ribosomal protein S2 1.3e-30
    FPrintScan Ribosomal protein S2 1.3e-30
    FPrintScan Ribosomal protein S2 1.3e-30
    FPrintScan Ribosomal protein S2 1.3e-30
    HMMPfam Ribosomal protein S2 3e-39
    superfamily Ribosomal protein S2 3.2e-71
    HMMTigr Ribosomal protein S2, eukaryotic/archaeal 6.2e-142

    See the detailed result >

    AT1G72370.1

    Model type
    Protein coding
    Short Description
    40s ribosomal protein SA
    Curator Summary
    acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
    Computational Description
    40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 3789 Blast hits to 3785 proteins in 1365 species: Archae - 262; Bacteria - 1853; Metazoa - 688; Fungi - 331; Plants - 191; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR