K31528

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31528

Determination of introduced cDNA(s)

J013070J17 - Rice Full-length cDNAs - Original: J013070J17

full reading [+] show sequence

GATCTTTCCA TATCCATATC CACCCATATC ACATCTCTGA TCAATCCTTC 
TGCGTGTTCG TGAATTGGGA AATTAATTTG GTTTTGAGAC AAATGGAGGC 
GACGTCGTCG TCGTCGTCGT TGTTGAACGG GCTGAACTCC GGCGTGGTGC 
TGAGCCTGAT CGCGGTGCTG TGGACGGTGG TGTGGCAGAA TCTGCAGCGG 
CTGCAGCTGC AGACGCTGGT GGGGCGGCAC ATGAACCGGC ACGCGCGGCG 
GCTGGCGGCG CTCGTCGACC CGTACCTGTC GGTCACCATC CACGAGTACG 
AGGGCGGCAG GATGAAGCGG AGCGCGGCGT ACGAGGAGGT CAAGGCCTAC 
CTCAGCGCGT CGTCGGCGCG CGACGTGCGC CACCTCCGCG CCGAGGGCGC 
CAAGGACGCC GACAAGCTCG TCCTCAGCAT GGTCGACGGC GAGGAGGTCT 
CCGACGTCGT CGCCGCCGAC GACAGCACCG ACGTCACCGT CTGGTGGTGC 
GCGTACTCCA CGCCGCCGCC GCGCACCGAT GGAGGCGGGT ACTACGGCTG 
GGGCGGCGGC GGCCGCGCGC AGGAGAATCG CCGGTACTAC CGCCTCTTCT 
TCCTCGACCG CCACCGCGAG CTCGTCATCA ACACCTACCT CCCGAGCATC 
CGCGGCCAGG GCCGCGCCGT CATGGTGCAG AACCGGCAGC GGAAGCTCTT 
CACCAACATC TCCACGCACA ACTGGAGCGA CGTCGACGGC CTCGTCCGGT 
CGGCGTGGAG CCACGTCGTG TTCGAGCACC CCAAGACGTT CGACACGCTC 
GCCATGGACC CGGCCAAGAA GAAGGAGATC ATGGACGACC TCGACATGTT 
CAAGAACGGC AAGGACTACT ACGCCCGCGT CGGGAAGGCG TGGAAGCGCG 
GCTACCTCCT GCACGGCCCG CCGGGCACCG GCAAATCCGC CATGATCGCC 
GCCATGGCCA ACTACCTCGA CTACGACATC TACGACATCG AGCTCACCTC 
CGTCCACTCC AACACCGACC TCCGCAAGCT CTTCATCGAG ACGACGAGCA 
AGTCCATCAT CGTCATCGAG GACATCGACT GCTCGCTCGA CCTCACCGGC 
GCGCGCAAGA AGAAGAAGGA GGCGGCCGAC GACGACGACG GCGGCAGCAA 
GGACGGCGGC GCGCCGCCCA AGCCGGACAT GAAGAAGGAC GCAAGCAGCA 
AGGTCACCCT CTCCGGCCTC CTCAACTTCA TCGACGGCCT CTGGTCGGCG 
TGCGGCGGCG AGCGGCTCAT CGTGTTCACC ACCAACCACG TCAAGAAGCT 
GGACCCGGCG CTGATCCGGC GAGGCCGGAT GGACAAGCAC ATCGAGATGT 
CCTACTGCTG CTTCGAGGCC TTCAAGTTCT TGGCCAAGAC ATACCTCGAC 
GTCGACTCCC ACCGCCTGTT CGCCGCCGTC GACGAGCTCC TGTCGGAGGT 
GGACATGACG CCGGCGGACG TCGCCGAGAA CCTGACGCCC AAGAGCTTGG 
ACGACAATGC CGACACGTGC CTCGCAGCAT TAGTGAAGGA GCTCGAGAAG 
GCCAAGGAGA ATAAATCAAA AGGAAAAAAT GCTCATGGCG AAGACAAAGA 
CGAAGACGAA GACGAAGAAG ATGACGATGT AGAAGTGGTC GGGAAGGATA 
AGTAGCTAGC CGCCATTGGC GCCTTGCTGG AGTGGTTGCT AGCTTCTCGT 
TTTTTCTAGT CCACGTAGCT TATGATCACA GTAATAGACT AAGTTTTTTT 
AAGAAAATTA TTTTCATTGT GG

Gene models with high sequence identity

AT3G28580.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 1e-112; Score: 404.00

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	2e-40
PatternScan	ATPase, AAA-type, conserved site	0
Coil	coiled-coil	0
HMMPanther	AAA-TYPE ATPASE-RELATED	4e-197
HMMPanther	BCS1 AAA-TYPE ATPASE	4e-197
Gene3D	no description	4.5e-32
HMMSmart	ATPase, AAA+ type, core	0.00000057
HMMPfam	ATPase, AAA-type, core	6.2e-16

See the detailed result >

AT3G28580.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-ATPase 1 (TAIR:AT5G40010.1); Has 26015 Blast hits to 22183 proteins in 2894 species: Archae - 1297; Bacteria - 7409; Metazoa - 4737; Fungi - 2999; Plants - 2564; Viruses - 69; Other Eukaryotes - 6940 (source: NCBI BLink).
Link: InterPro Scan - TAIR