K31531

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31531

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31531

Determination of introduced cDNA(s)

  • J013048K11 - Rice Full-length cDNAs - Original: J013048K11

    full reading [+] show sequence

    Nucleotide sequence: J013048K11 - full reading 
    GTGAGATGAT TTTTCCCGTT GTGTATTTGT CTTCTTCGTC TTCTTGTTCC 
    TTTTTTTAGT GTTTGCTGTT AGGTTGCCAA TGGTGCCATT AAGGAAGAAG 
    TAGTCCGCAA AGGGAATGAA GCTGTACTCA GGTTATGAAT GTTTTAGCAA 
    TGCTACTGTG TAAAATTTAT AGCTGGAGCT TTGACTGGAA GACATAATTC 
    TAGATAATGG ATAGAAGTAG CCATAGTTTG ATTACCAGCA TTATGTTTGC 
    ATCGTCTTTT CTTCCCTCTG CCTTTTTTTT ATTCCGCAAG AGAGCTGTAG 
    TCAACTGTAG ATTTTTTTTT TGCGAGGAAC CGTAGATTCT GAATTGGTAT 
    ATAAATACAG GGCACGGTAT GAGGATGCTA AATTCTTTTA TAAGATGGAT 
    ACGCAGAAGA AACTTTCTGA ATTCCGAGAT CAGCTCAGCA GCATTCTCTT 
    TCATGAAAGA CTTGGTACCA TGCTTGACAA AATGAAACGT GTTGAGAACA 
    CTGTTGCAGA AGTGGCCCTC CTTCTCGGAA TTAATGAGAA AATGATCCCA 
    GCAATCAAAG ATGCAGCTGC ATTGGCTATG TCAGATCTTG CCACTAATAT 
    TGTTACTGAA TTTACTTCAC TTGCTGGAAT TATGGCACGG CATTATGCTT 
    TGAGAGATGG CCTTTCAGAA CAGATTGCAG AAGCCCTATT TGAGATAACA 
    CTTCCAAGGT TCTCTGGTGA TGTGTTCCCA AAAACAGATC CTGGCATAGT 
    CCTTGCAGTC ACTGACAGAT TGGATAGTCT AGTGGGTCTG TTTGGAGCTG 
    GATGCCAACC AAGTTCTACA AATGATCCAT TTGGGCTAAG GAGAATTTCC 
    TATGGATTGG TTCAAATATT GGTTGAGAAC AAGAAGAACT TTGACCTCAC 
    GAAGGCCTTG ACCTTAGTGG CAGAGGAGCA GCCAATAACA ATAGATAGTG 
    GTGTTATAGA TGAGGTAGTA CAATTTGTCA CGCGGAGATT GGAGCAACTT 
    TTGGTACGTA TTTCCTTGAA CAGTAATAAT AGTCTGAGTT ACATATAATG 
    CTTTTATTCC CCAAGACTCC ATCCTTTTGG AATCTACCAA GGATTAGAGT 
    AGAAGCTTAC CTACACTGGA AGAGCAAGTA TCTTTTCCCG TACAGACTGG 
    TTTTAGTGAC GTTTTCTCCC TCGTACACAA GAAATTCCGA AGATAAATAT 
    GCATACTATC ATTGCTTCAT GTTTATCCAT GTAGCTTATT CAGCATAGTA 
    CCGAGCATGG ATTTTGTTGC CATCTCTGCT TCTGTTTTCA CTTCTGATCC 
    TTTTTTTTTA TCAAATACAA GTCAACAATT GTCAGTGAAA TCCATTTCCT 
    GTAACTGATG GTTTTTCGTC AATTTATCAG GTGGATGAAG GAATTAATTG 
    CGAGATAGTC CGTTCAGTGC TTATAGAGCG TGCAAACTGC CCTTATCTAG 
    CATCACAAAC AGCAATTGAA ATGGAAGCAT TTTCAAGAAC TGAAGATTTC 
    CCAAAAATTG TCGAAGCGTA CTCAAGGCCC GCGAGAATAA TACGTGGAAA 
    AGAAATTGGG TCTGCTTTAG AGGTTGATGC AAGTGTATTT GAGAAAGACG 
    AAGAAAGAGC TTTGTGGAGT GCCTACTTGG AGGTTGCGGA TAAGATTCAT 
    CCTGGTACAC AATCTTATCC AAAGTGAAAA ATAATCCGAG ATCCACTGTT 
    TCTTCTGTTG ATCCTTTTTT CTCTCGTGTG AAATATATGT GCTTTGCATC 
    GTCTATTCTT TCGGGCGTGC TGTATATTCT GTTTACTTGT ATCCACATTC 
    CACCCTGTAG GTGTTGACAT AAAAGCCTTT GCGGACGCTT CTCTGGAACT 
    GCTGCAACCC CTAGAAGATT TCTTTACAAA TGTTTTTGTC ATGGCGGTGA 
    GCTTAATTTT CGAGTACTAA GCATCTACTT AGCCATTTAT TACTAAATGA 
    TTTAGACTTT GGTAATGGTG TATGCTTTGC TATGTGGTTG GTGATACAGG 
    AAGACGAGAG AGTTCGTAAC AATCGGCTTG CACTGCTAAC GAAGGTTGCG 
    AGTCTGCCAA AGGGAATTGC CGACCTGTCA GTTTTACCAG GGTTTTAGCC 
    ATTTTTTGTT GCTCTTCTAG TTTTATCTGT ACCATGCTTG TACATTCATA 
    CCGACTACAG TTTTGCAGCC AAGAAAAGAG CGTGATCCCT ATATATATAA 
    TGTATAGGTA GCTAGCATAA ATTGTCCTCA ACTTTGTTGT CCATTGCTAT 
    GTTAAACATA TGTTTTTGTT TTCAAACCAT TTTGGAAATC AAATGCCATA 
    ACTTGTATC

    Gene models with high sequence identity

    1. AT3G48110.1 [+] show detail - glycine-tRNA ligases
      E-value: 3e-85; Score: 313.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal 2.5e-68
    FPrintScan Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal 2e-05
    FPrintScan Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal 2e-05
    ProfileScan Glycyl-tRNA synthetase, class II, heterodimeric 39.005

    See the detailed result >

    AT3G48110.1

    Model type
    Protein coding
    Short Description
    glycine-tRNA ligases
    Curator Summary
    glycine-tRNA ligase
    Computational Description
    EMBRYO-DEFECTIVE-DEVELOPMENT 1 (EDD1); FUNCTIONS IN: glycine-tRNA ligase activity; INVOLVED IN: regulation of embryonic development, glycyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal (InterPro:IPR002311), Glycyl-tRNA synthetase, class II, heterodimeric (InterPro:IPR006194), Glycyl-tRNA synthetase, class IIc, beta subunit (InterPro:IPR015944), Glycyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR002310); Has 11308 Blast hits to 11293 proteins in 1754 species: Archae - 4; Bacteria - 6864; Metazoa - 4; Fungi - 1; Plants - 40; Viruses - 0; Other Eukaryotes - 4395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR